Dsor009500.1
Basic Information
- Insect
- Drosophila sordidula
- Gene Symbol
- bab1
- Assembly
- GCA_035047465.1
- Location
- JAWNPQ010000185.1:1713904-1717215[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-17 1.8e-14 53.1 0.0 1 43 55 98 55 100 0.95 2 3 2 3.1e+03 -2.1 0.4 11 21 224 234 223 245 0.73 3 3 5.9 9e+03 -3.6 0.7 9 23 238 255 231 257 0.52
Sequence Information
- Coding Sequence
- ATGATGGAGAACTCGCACGCTTGGATGGGCGCAACTGGTTCGACGCTTGCAGCAGACAGCTACCAGTACCAGCTGCAGTCGATGTGGCAGAAGTGCTGGAACACCAATCAGAATCTGATGCATCACATGCGGTTCCGCGAGCGCGGCCCGCTCAAATCGTGGCGCCCCGAGACGATGGCCGAGGCCATTTTCAGTGTGCTCAAGGAGGGCCTCTCGCTGTCGCAGGCGGCCCGCAAGTACGACATACCCTATCCGACGTTCGTGCTGTACGCGAACCGGGTGCACAACATGCTCGGGCCCTCGATCGATGGGGGGCCCGATCTGCGGCCGAAGGGACGCGGCCGGCCGCAGCGCATCCTGCTGGGCATTTGGCCGGACGAGCACATCAAGGGCGTCATCAAGACGGTCGTCTTTCGCGACACCAAGGACTTGAAGGACGACAGCTTGGGCGCCCACATGCCGCCCTACGGGCGTCATTCGCCCGTGTTTCCCTTGCAGGACATGGCGCTGAGCTATCCGGGCGCTAGCGGGGGCATGCCGggcagcggcgccgccggcCTCAGCGCGTTGGCCTGCCCCAACGgcatgggcggcggcgggggcgtggGCGTTGGCGTGGGAGGTGGAGGCGGCGTGGGCGCCgccagcggcgccggcggcggcggcgcctcgGTCGCCGAGCAGCAGATGTCCCAGGAGCAGATGTCGGCGGTGGCCGCCGTCGCGCACAACATACGCCAGCAGATGCAGATGGCCGCCGCAGCGCAGCATCAGCACGGGGAGGCGGGGCCGCCGGCGGGGCTGTTCAATCTGCCGCCGCACCTGGCGGGCGGGCCGGGGCGGGCGAGCATCTCGCCGGCACTGAGCAGCGGCTCCAATCCGTCGCTGGGACCCCGGCACGCGCCGTCGCCCTGCGGTCCCGCCGGCCTCATGCCGAATCTGCCGCCCAGCATGGCCGTTGCACTGCATCGCGATCcggccgccgccgcgctgctcagccagcagcagcagcaccacctgcagcagctgcagctgcaccagcagcaccagcaccagcagcagcagcagcagcaacagcaacagcagcagcaacacgcgctgcatcagcagcagcttcacATGCAGCCACACAAGTCCGGCTTCGGTGCCAGTTCCATGTCcacccaacagcagcagcagcagcaacagcagcagcagcagcagctggacaaGTCCAAGGCGAAGGGCAGTCCGCTGCGGAGCGGGACGCCGCGGCTGCACTCGCCGCTGGCCGAGCTGGGCCTGGACATGGGCTACAAGCGCGACTATTCGCCGACGCGCCTCTTCGCCGAGGACCTGGCCGAGCTGGTGGGCGTCGGCATCGCCGCCTCCACATCGCCGGCGACCAGCGCCAGCACCGCGACAACAACGGCGCCAGCCGCCGCGGCCACAGCGGAGatctgcgccagcagcagcagcagcgccggcggcatCAAAGTGGAGCCCATCACGACCAGCAGCGAGTAG
- Protein Sequence
- MMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDTKDLKDDSLGAHMPPYGRHSPVFPLQDMALSYPGASGGMPGSGAAGLSALACPNGMGGGGGVGVGVGGGGGVGAASGAGGGGASVAEQQMSQEQMSAVAAVAHNIRQQMQMAAAAQHQHGEAGPPAGLFNLPPHLAGGPGRASISPALSSGSNPSLGPRHAPSPCGPAGLMPNLPPSMAVALHRDPAAAALLSQQQQHHLQQLQLHQQHQHQQQQQQQQQQQQQHALHQQQLHMQPHKSGFGASSMSTQQQQQQQQQQQQQLDKSKAKGSPLRSGTPRLHSPLAELGLDMGYKRDYSPTRLFAEDLAELVGVGIAASTSPATSASTATTTAPAAAATAEICASSSSSAGGIKVEPITTSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00557834;
- 90% Identity
- iTF_00560962;
- 80% Identity
- -