Dsor006747.1
Basic Information
- Insect
- Drosophila sordidula
- Gene Symbol
- -
- Assembly
- GCA_035047465.1
- Location
- JAWNPQ010000156.1:1272831-1274441[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.7e-15 2.5e-12 46.2 0.0 2 45 367 410 366 410 0.95 2 3 0.061 94 2.8 0.0 28 37 440 449 439 454 0.90 3 3 3.9e-19 5.9e-16 57.8 0.0 2 42 476 516 475 518 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGATATACAGCGCGTTCTGCTGGACCAGCAGAGCAACAATCAACAATGCGAGGTCTTGCTCGTGGCCAAAGACGGCATCAGTGTGCGCGCCCATCTCTTCGTGCTAAGCACGTGCAGCGATTTGATGCGGAATCTGCTGGTCGATTTGCCCGCCGGCCAGGAGGCGACTGTCATCCTGCCCGACATCCGTGGTGAGCTGCTCGAGAGCATGTTGTCGTTTATTTACATGGGCGAAACCAGCTTACCCTCTACCCTGCTCACCGAGTTTCTGGAAGCGATCAACTTATTGGGCATCAAGTCGGCCATTAGTTTTGAAACCAATCCCGCAGCCGTGACCACCTCAAATGTTATCAGCGGCGCCATGGCTGTCGAGGCGGCCAAGTCCATTAGCGGCTTACACATTGCGAATACAGCCCTcatggaggaggaggaggaggaagaaGACCCTGGCGCTGTGGTCGATAAATTGGAGGTGGGAACTGCCGTGCTCGCCAATGcacagcaccagcaccacgaTCATGATGGCCGAACGTTAGAGTTCCTGGATATGTACGGCGATCAGCCCAAAATCACGTATTCCATTGAGCACATGGGCGGCACAAGCAGTGGAAATCAGTATATATTAACGGAGAACACAGGAACATTTACCATCACACAATCTGCATCATCTGTGGCCAAGTTGGGTGTATCGGGATCTTCGGCAGTGGATACTGTGGCTACCGGTGATCTGGGCGATGATGATGTGGAGGCTGATGTTACTGACGAACACGACGAGTCCGAGTCACAGTTAATCGAGGAAGAGTATGTTGCCTCCGCAGATCCTCTAATAGAAATGTCCGGGGATGCGGATGGGGATGTTGATATGAACGAAGACGGAATGCACGAAGGGGATGCCGGGGACGAGGAGGAAGATGACGAACTGCTGGATGTCAAACCACACAAAGTTCAGCTTGATATGAAGATGTTAAAAGCAAAGTCCCGCCAGCGGTCGCCGTCGTcgaagacaacaaaaaagacaATGACGaaacagcatcaacagcaagccgcattcaaaaaggaaatgaAGGACGATATCAATGATGCCCTCGAACTGGCCGCTTCGGCAGTGCTCCATGAAGGGCTTAGTCTTCAAAAGGCCGCCGATCGATTCGACATATCGAAAACCGTGCTATGGCGACGTGTACGCTCCAATCCAGCCTACATGCGAATAAAGCGGGAAAAGCCATCGCTATCGGAGGCATACGAGCGTTTGAAGAGCGGCGATTCGCTGAAGAGCATTAGCCAGGATCTGCACATACCCATGTCGACGTTACACCGGCACAAAGTACGACTGGCGGCACAAGGTCGTCTGCCCGATTTTGTTTCCTGCCGGCGGCGGGATAGCACCCCGAAAGACGAGCTGCGCGACAAGCTGGCCAAGGCGGTGCACGCCTGCATAAACGATGGCATGTCCCAAAATCATGCGGCAAATCTCTTCGAAATTCCCAAGAGCACGCTGTGGCGGCATTTGCAACGCCGCGTTACCGAGGCGGAGCGTAAAGTgaaggaggagcaggaggaagACGACGATGAAGACGttctcaattaa
- Protein Sequence
- MGHSSTIMDIQRVLLDQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLESMLSFIYMGETSLPSTLLTEFLEAINLLGIKSAISFETNPAAVTTSNVISGAMAVEAAKSISGLHIANTALMEEEEEEEDPGAVVDKLEVGTAVLANAQHQHHDHDGRTLEFLDMYGDQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSASSVAKLGVSGSSAVDTVATGDLGDDDVEADVTDEHDESESQLIEEEYVASADPLIEMSGDADGDVDMNEDGMHEGDAGDEEEDDELLDVKPHKVQLDMKMLKAKSRQRSPSSKTTKKTMTKQHQQQAAFKKEMKDDINDALELAASAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKSGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVSCRRRDSTPKDELRDKLAKAVHACINDGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDDDEDVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00530367;
- 80% Identity
- iTF_00598261;