Dsil008690.2
Basic Information
- Insect
- Drosophila silvestris
- Gene Symbol
- -
- Assembly
- GCA_035043445.1
- Location
- JAWNMZ010000140.1:9152726-9159643[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.1e-05 0.0014 18.9 2.1 1 23 236 258 236 258 0.97 2 14 6.9e-06 0.00046 20.4 0.4 1 23 264 286 264 286 0.97 3 14 0.0047 0.31 11.5 0.7 1 23 292 314 292 314 0.95 4 14 3.3e-05 0.0022 18.3 4.7 1 23 348 370 348 370 0.99 5 14 6.1e-05 0.004 17.5 5.7 1 23 376 398 376 398 0.97 6 14 3e-07 2e-05 24.7 4.3 1 23 404 426 404 426 0.98 7 14 1.1e-07 7.1e-06 26.1 2.4 1 23 432 454 432 454 0.97 8 14 6.2e-05 0.0041 17.4 6.7 1 23 461 483 461 483 0.97 9 14 0.00011 0.0072 16.7 6.5 1 23 489 511 489 511 0.98 10 14 0.011 0.71 10.4 2.2 8 23 554 569 549 569 0.94 11 14 0.0002 0.013 15.9 9.5 1 23 585 608 585 608 0.95 12 14 7.1e-05 0.0047 17.3 0.9 1 23 614 636 614 636 0.98 13 14 0.00078 0.051 14.0 3.4 1 23 646 668 646 668 0.97 14 14 8.8e-06 0.00058 20.1 1.6 1 23 674 697 674 697 0.96
Sequence Information
- Coding Sequence
- ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTTTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACCTTAGGCGGACCGCCGTCATTGCCCGGTGTCAAATCGTCGGAATCATCGCATAAAGAGGACGTCGGCAAGCAGCCGCCACACGGCATTGAAATGTATAAAGTGAACATTGAGGATATATCGCAGTTATTCACGTATCACGAGGTCTTTGGCAAAATCCACGGCGATGTGGTTAATCATGTGGCGGCGGTGCATGGCAGCCAGTTGCCACCGCCGCAACTGCCACCGCCGCCCCCCCTACCGCCACAGACGACGCATTCGGCAagcgcagctgcagcagcagcggcggcCAGCcgcggctgcagcagccgctcAGTAGCGGCATcggcacaacagcaacaacagcagcagcaacagcagcaacagcaacaacaacagcaacaacagcagcaacaacagcaacaacaacagccagcgACAAGCACAAATGCTGGCAGCCAGCAGGGCAGCGCCACGGTGACAACGACCAGCTCGGGCAGCAGCGGGGGTGGGAATGGGGGCAGCAACTCAACGACAACGACGGGTGAGTTGCTAATGCCAAAAATGGAGGGAGGCATCCATGGCGTTGATGGTCAGTCGAGCGTTGCGTTGGCGCCAGATGGCACGCCCATTGCGACTGGTACGCATGTGTGCGACATTTGTGGCAAGATGTTCCAGTTTCGCTATCAGCTGATTGTGCACCGCCGCTACCACAGCGAGCGCAAGCCGTTCATGTGTCAGGTGTGCGGTCAGGGTTTTACCACATCGCAGGATTTGACCCGTCATGGCAAGATCCACATTGGTGGTCCCATGTTCACGTGCATTGTCTGCTTCAATGTGTTTGCCAATAATGCGAGTCTGGAGCGCCATAGGAAACGGCATTCAACGGACAAGCCATTCGCCTGCACATTTGCCAAAAGACTTTCGCACGCAAAAGAGCATCTGGACAATCATTTTTCGTTCGCATACGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGgTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCACCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAAATCTGCGGCAAGAGCTTTAGTCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGTGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACGCGCAAGGAGCATTTGTTAAATCATGTGCGCCAGCACACTGGAGAGTCGCCACATCGCTGCTCCTACTGCATGAAGACGTTCACGCGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGCGAATCGCCGCACAAGTGCACATATTGCAGCAAGACGTTTACGCGCAAGAGCACCTCACCAATCATGTGCGACAGCATACGGGCGATTCGCCGCATCGCTGCTCTACGCAGAAGACCTTCACCCGCAAGGAGCACCTGACGAATCATGTGCGTCTGCACACGGGGGACTACCGCACGTGCAGTACTCACTCCAGCGACAATCCCCATTGTTGCAACGTCTGCAACAAGCCCTTCACACGCAAGGAGCATCTGATCAATCATATGTCACGCTGCCACACCGGCGATCGTCCCTTCACCTGCGAGACGTGCGGCAAATCCTTCCCACTCAAGGGCAATCTGCTGTTCCATCAGCGCAGCCACACCAAGGGGCAGGAGTGCGAGCGTCCATTCGCCTGCGAGAAGTGCCCCAAGAATTTCATATGCAAAGGTCACTTGGTGTCGCACATGCGCTCCCATTCGGGAGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCGTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCCgtgcatccgcatccgcaaaTACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCATCActcggcgacgacgacgatgcaCACCATCCAGCAGATAACAGCGGGCGCCGCAGCAGCGGGCGCTGGGGCCGTCCAGTTAGCGCCAGGCCTGGTGCCGCTGGTCACCAGCTCGCTCATCTCGCACAATGCGCAGCAGtcacagaagcagcagcaggcggcggcagcagttgccgcccaacagcaggcggcagcagcagccgctgcacaGCAACAGGCGGCCGCTGCGGCGGCAGCCCAGCagcaggcggcggcggcagcagcgcatcagcagcatcagcaacaggtggccgcacaacagcaacaacaacagcagcagcagcaggctgccGTCGCtgcgcatcagcagcagcaacagcagctgcagcagcaacacatcagcagcagcagcaacaacagcagcagcagcagcagcagcaacatcaccaacagcagcaacacagctgcagcatctgCCACAAATGTGGAACAACATCCGGTGGTTTACTAA
- Protein Sequence
- MQHVSAASSAPSVVSAPVVTTGGGTTITLGGPPSLPGVKSSESSHKEDVGKQPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQTTHSASAAAAAAAASRGCSSRSVAASAQQQQQQQQQQQQQQQQQQQQQQQQQQQPATSTNAGSQQGSATVTTTSSGSSGGGNGGSNSTTTTGELLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNASLERHRKRHSTDKPFACTFAKRLSHAKEHLDNHFSFAYGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPRIAAQVHILQQDVYAQEHLTNHVRQHTGDSPHRCSTQKTFTRKEHLTNHVRLHTGDYRTCSTHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLAPGLVPLVTSSLISHNAQQSQKQQQAAAAVAAQQQAAAAAAAQQQAAAAAAAQQQAAAAAAHQQHQQQVAAQQQQQQQQQQAAVAAHQQQQQQLQQQHISSSSNNSSSSSSSNITNSSNTAAASATNVEQHPVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00560429;
- 90% Identity
- -
- 80% Identity
- -