Dsia006663.1
Basic Information
- Insect
- Drosophila siamana
- Gene Symbol
- -
- Assembly
- GCA_035047445.1
- Location
- JAWNPP010000020.1:2169877-2170489[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.3e-23 8.7e-20 70.5 17.1 1 70 81 151 81 151 0.96
Sequence Information
- Coding Sequence
- ATGGATCAAAAGCGTGCCATGCTTTATCCGCAAGTGGATTTCAACACACCTAGCGCACCTTTGCCAACGCCAACGGTTGGACAAACTGGTGGCCCGATTGAAGCACCGCCTTCGTATGATGTGGCAATTGCAACTCAACAGACGCCCGAAGCGCCCGCTCCAGTGATTGTTGTGAATACTCAGCCGCTGCCTCAACAGTTGGAACCTACAATTGTACCAGCAGCTCCATCCAATTTGGGGCCCAATCCCTGTCGAGTGCTGTGTCCCGCTTGTGGCGTCCAAAAGACAACACGCATGACGCACACAGCCAACGCACGCACTCACCTGGCTGCTGCATTAATCTGCCTAGTGGGATGGTGTGTCTGTGCCTGCTTTGTTCCCTACTGCATGAACAGCTGCCGCACAGGCAATCATTACTGCCGCAAATGCAATACTTTTTTGGGCGTTTATAATCCAAAGGGCGTCAAATGA
- Protein Sequence
- MDQKRAMLYPQVDFNTPSAPLPTPTVGQTGGPIEAPPSYDVAIATQQTPEAPAPVIVVNTQPLPQQLEPTIVPAAPSNLGPNPCRVLCPACGVQKTTRMTHTANARTHLAAALICLVGWCVCACFVPYCMNSCRTGNHYCRKCNTFLGVYNPKGVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00562851; iTF_00472726; iTF_00554071; iTF_00556893; iTF_00589923; iTF_00569380; iTF_00479171; iTF_00471282; iTF_00584101; iTF_00608856; iTF_00558329; iTF_00579658; iTF_00521020; iTF_00509490; iTF_00614579;
- 90% Identity
- iTF_00589923;
- 80% Identity
- -