Dsia007397.1
Basic Information
- Insect
- Drosophila siamana
- Gene Symbol
- bab1
- Assembly
- GCA_035047445.1
- Location
- JAWNPP010000040.1:61312-64000[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-17 1.8e-14 53.0 0.0 1 43 55 98 55 100 0.95 2 2 8.9 1.3e+04 -4.2 1.6 6 16 200 210 200 212 0.82
Sequence Information
- Coding Sequence
- ATGATGGAGAACTCGCACGCTTGGATGGGCGCCACCGGATCAACGTTAGCAGCAGACAGCTATCAGTATCAGCTGCAATCGATGTGGCAAAAATGCTGGAACACCAACCAAAATCTCATGCATCACATGCGCTTTCGCGAACGCGGTCCACTCAAATCGTGGCGCCCCGAAACCATGGCTGAGGCCATCTTCAGTGTGCTCAAGGAGGGACTTTCGCTGTCGCAAGCGGCCCGCAAATATGACATACCCTATCCCACGTTTGTGCTGTATGCGAATAGAGTGCACAATATGCTCGGCCCGTCCATCGATGGCGGCCCCGATTTGCGGCCCAAGGGACGTGGACGGCCGCAACGCATTCTCCTGGGCATCTGGCCGGACGAGCACATCAAGGGCGTCATCAAGACGGTTGTTTTTCGCGACACCAAGGACTTGAAGGACGACAGCTTGGGGGCGCACTTGCCACCTTATGGGAGGCATTCGCCCGTGTTTCCTTTGCAGGACACGATGCTGAGCTACCCAGGCGCTAGTGGCGCCATGCCGGGCACCGGCGGCGCCTCCAGCCTCAGCGCCTTGGCCTGTCCCAACGGCATGGGCGgcgcagcggctgcggctgctgttgctggcggcggtggcagcggtgCGGGCGGCGTCGGAGTCGGTGGCCTTGGCGTCGGCGGTGTGGGCGGCGAGCAGCAGATGTCGCAGGAGCAGATGTCGGCGGTGGCCGCCGTGGCGCACAACATACGCCAGCAGATGCaaatggcagcggcggcgcaGCATCAGCATGGCGAGGCGGGACCGCCGCCGGGCCTCTTCAATTTACCGCCGCATTTGGCGTCGGGCGGCGGGCCGGGCGGACGGGCGAGCATCTCGCCAGCATTGAGCAGCGGCTCGAATCCATCGCTTGGCCCGCGGCATGCACCGTCACCCTGCGGCGGTCCCGCCGGCCTCATGCCGAATCTGCCGCCCAGCATGGCCGTTGCACTGCATCGCGATCCCGCTGCCGCCGCACTgctcagccagcagcagcagcatcacctgcagcagctccagctgcatcagcaccagcaacagcagcaacaacagcagcagcaacaacaacagcagcaacaacagcagcaacatgtgctgcaccagcaacaggcggcagcagcagcggcagcggcggcagcagcagcagctgctgcagtgcaTCCGCATCATCTGCAGTCGCAGCACAAGTCCGGTTTCGTCGGTGCCAGTTCCAGCTCCTCCTCTGCcgtccagcaacagcagcagcaacactcgCAACTCGGTCTCAGCCACCTGGATAAGCCCAAGGCCAAGGGCAGCCCGCTGCGCAGCGAGACGCCACGCCTGCACTCCCCGCTCGCCGATCTCGGCCTCGAGATGAGCTACAAGCGCGAGTACTCGCCCACGCGCCTCTTCGCCGACGATCTGGCCGAGCTTGTGGGCGCCAGCGGCGTCGGCGTGGGCGTCGTTGGCCTggcgtcctcgtcgtcgtcggccaCGAGCGTCACcacggcgacgacaacggcggcacacagtggagcagcagcagtaggaGTGACGGGTGCGAGCAGCGGGGACGGCAGCATCAAAGTGGAACCCATTACCACGAGCAGCGAATAG
- Protein Sequence
- MMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDTKDLKDDSLGAHLPPYGRHSPVFPLQDTMLSYPGASGAMPGTGGASSLSALACPNGMGGAAAAAAVAGGGGSGAGGVGVGGLGVGGVGGEQQMSQEQMSAVAAVAHNIRQQMQMAAAAQHQHGEAGPPPGLFNLPPHLASGGGPGGRASISPALSSGSNPSLGPRHAPSPCGGPAGLMPNLPPSMAVALHRDPAAAALLSQQQQHHLQQLQLHQHQQQQQQQQQQQQQQQQQQQHVLHQQQAAAAAAAAAAAAAAAVHPHHLQSQHKSGFVGASSSSSSAVQQQQQQHSQLGLSHLDKPKAKGSPLRSETPRLHSPLADLGLEMSYKREYSPTRLFADDLAELVGASGVGVGVVGLASSSSSATSVTTATTTAAHSGAAAVGVTGASSGDGSIKVEPITTSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00557834;
- 90% Identity
- iTF_00589476;
- 80% Identity
- -