Dsia012343.1
Basic Information
- Insect
- Drosophila siamana
- Gene Symbol
- retn
- Assembly
- GCA_035047445.1
- Location
- JAWNPP010000101.1:573661-589187[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-26 7.9e-23 80.5 0.0 2 89 329 414 328 414 0.96 2 2 1.5 2.3e+03 -1.1 0.3 7 45 577 618 560 627 0.61
Sequence Information
- Coding Sequence
- ATGGATGCGAGCTGTGGTCCGGtgaagctgccgctgtcgctgccgatGATGATCgagatgacgatgatgatgatgatgatgTCCCACGGCGATCGAACGGATGACGAGATgcgcgactgcgactccgtTGACGGTGAGCATCATCAGCTGAGCGCCAAGGCGGCAATTGCAGCTCGGCTCAGTCACACAGTCGCCGGCGGCGCTGGCCTCAATTTCGCCAGCCCCGAGCAGCAAACAGATCTGCCACTCagCCATCACCACCAGCTGCCCCCGAATCATCCGCTCAATGCGCTGGGCAGCTTCATGGGCATCAGCGGACTCCACAGCATTCCAAATCTGCAGCACAGCGATGTACTCGAGAAGCTCAAGATGCAAGTGCGTGATATGAAAGTCGGTCTCATGGAGCAGGActacgcagcagcagcacatgcaGCCGCCTTCGGGGCCAACATGTTGCCCACAACGATCGGCTCGGCCTTTCCGCTGCCCCACAACTCGGTGgccgcagctgcggcagctgcatcCTTTGCACCCGTGCCGCCTGCCAGCAACGGCGCCAGCTACAACGGTGCGGCGAGCGGTGTGCCCAATGTTGgggctggagcagctgcagccgctgctgcggcggctgctgcggtgATGGCCGCCAAtacggccaacaacaatggaaTCAACAGTGGAGCAGGTGGAGGAGGaacaggaggaggaggaggcggcggcggcggtggtaacaacagcaatgccgTCAGtggaagcaacaacaacaacaacagcaataataataacaacaacaacaacagcaacaatgggcATCCTTTTTCCTTTGCATCGCCGACAGCGCCCAGCGCCAAAGAAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCGCAGCAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATCAACGATGATCCCAAGCGCAAGGAGTTTCTCGAtgatttgttttcgtttatgCAAAAGCGCGGCACCCCCATCAATCGCCTGCCCATAATGGCCAAGTCGGTGCTGGATCTGTATGAGCTGTACAATTTGGTGATAGCTCGCGGCGGCCTCGTCGATGTGATCAACAAAAAGCTGTGGCAGGAGATCATCAAGGGACTGCACCTGCCATCGAGCATCACCAGTGCGGCATTCACACTGCGCACCCAATACATGAAGTATCTCTATCCATACGAGTGCGAAAAGAAGAACCTCAGCACCCCAGCCGAACTGCAGGCCGCCATCGACGGCAATCGTCGCGAAGGACGCCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAGATGCCACTCACGCCCATTTCACGCCCATCACTGCCGggtggcatgcaacaaatgTCGCCACTGGCGCTGGTCACACACGCCGCGGCAGCAAACAATCAGcaggcagctgccgccgcagcagccgcgCATCGACGATTGATGGGCGGCCCGGCATTTGGCCAGATGCCCAATCTGGTGACACAGGAGATCGAGAATCGCATGATGGAGTATCTGCAGCTCATACAGGCCAAGAAGGAGCAGGGTGCCGGCCCCGTGCTCGGCGCCACACTTccccaccagcagcagcagcaacaacagcagcagcagcagcagcagcagcagcaacaacagcagcagcagcaacaacagcaatcgctgcaccaccaccaacagcagcagcagctgcagcagcaacagcagcagcgacagcgctcTCAGAGTCCCGAGCTGAGCACGCGCGATGCGCTGAGTGCGCAAGTGGCGCTGTGGCATATGTACCACAACAGCAGTCCCAATGGCTCGGCACACACCTCACCACAGCAGCGCGAAGCCTTGAACCTCTCCGACTCGCCGCCGAATCTGAATCTCAGCCACATCAAGCGGGAACGCGAACGTGACCCAACACCAGAGCCAGCGGATCACGAGGATGCCGCCCACCAGCCGCCGCCAGCCAAACGCGTGGGCAGCGGCCTAATGCCGCCCGcaacacagcagcagctacaacaggACGCCGTGTCCGAGGGCGAGCCAGAGGATGACTACGGCAATGCCGAGCACAACACCACGGGCAACTCGTCCTCAATGCAGGATGACATCgagccacagcagctgaacggccatcatcatcatcatcaccaccatcatctGCATCACCAACAGAATCATCTGGACAAGTCGGACGATTCGGCGATTGAGAATTCACCCAGCACTTCCACAACGGCGTCCGCATCGGGCGGCCATCGTCACAGCTCGCCAGTGTCCACCAAAAAGAAGAGTGCCAGTAGTAAAGCAGCTCAGTCCAGCAGCAATGATGCTGAGCACGAGAGCTGCACAGTGAACGGTGGCGTGGCCAAGCTAAGTCCCCTCGAGACACTCAGCCTGCTCTCGGGCATGCAGTTTCAAGTGGCACGCAATGGCACTGGCGCCAatggcgagcagcagctgattgtCAATCTGGAGCTCAATGGCATTAAGTACTCGGGTGTGTTGGTGTCCAATGCAACCCGAGTGGAGCCCACAGTCGATGCGGACTCGGACACGCTAAATGCGGCTGCCACGTCCGAAGAGCCAGCGCCCGAGGAGGCTAGCAATGCGGTCAAGCATGAGAATAGCCAGGAAGTCAACCAGAACGAGCCAgtcgacgaggacgaggacgaggacgaaaCGGAGCGGACCGCGGAGGACACTGTGAATGGTGTGGCAATTGCTGGCGGCGTTAGTGGGGTCAGTGGTGTCAGTGGTGTTAGTGGGGTCAGTGGTGTCAGTGGCGGGGCTGTAGCGGTGGGCGTGTCTGTGCTAAAGGATGCGGTCGTCAGTTCATAA
- Protein Sequence
- MDASCGPVKLPLSLPMMIEMTMMMMMMSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGAGLNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMGISGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTIGSAFPLPHNSVAAAAAAASFAPVPPASNGASYNGAASGVPNVGAGAAAAAAAAAAAVMAANTANNNGINSGAGGGGTGGGGGGGGGGNNSNAVSGSNNNNNSNNNNNNNNSNNGHPFSFASPTAPSAKEANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPSLPGGMQQMSPLALVTHAAAANNQQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQGAGPVLGATLPHQQQQQQQQQQQQQQQQQQQQQQQQQSLHHHQQQQQLQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPNGSAHTSPQQREALNLSDSPPNLNLSHIKRERERDPTPEPADHEDAAHQPPPAKRVGSGLMPPATQQQLQQDAVSEGEPEDDYGNAEHNTTGNSSSMQDDIEPQQLNGHHHHHHHHHLHHQQNHLDKSDDSAIENSPSTSTTASASGGHRHSSPVSTKKKSASSKAAQSSSNDAEHESCTVNGGVAKLSPLETLSLLSGMQFQVARNGTGANGEQQLIVNLELNGIKYSGVLVSNATRVEPTVDADSDTLNAAATSEEPAPEEASNAVKHENSQEVNQNEPVDEDEDEDETERTAEDTVNGVAIAGGVSGVSGVSGVSGVSGVSGGAVAVGVSVLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502302;
- 90% Identity
- -
- 80% Identity
- -