Dser000677.1
Basic Information
- Insect
- Drosophila serrata
- Gene Symbol
- lolal
- Assembly
- GCA_002093755.1
- Location
- NW:1595760-1683770[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.6e-12 1.8e-08 33.7 0.0 1 40 746 786 746 789 0.90 2 4 4.8e-14 9.8e-11 40.9 0.1 2 39 801 838 800 841 0.94 3 4 1.1e-17 2.3e-14 52.5 0.0 1 45 855 900 855 900 0.98 4 4 1.1e-19 2.3e-16 58.9 0.0 1 43 907 950 907 951 0.97
Sequence Information
- Coding Sequence
- atGGCCGCGGTACGAGGACATCAGTACTTTAGTTTGCGCTGGAACAACTATCAGAACACTATGACATCGGTGTTCCAGCAGCTCCGCGAGGATCTGTCCTTTGTGGATGTCACTCTGTCCTGCGAACACGGATCCCTCAAGGCGCACAAGGTTGTTTTGTCCGCCTGCTCGACGTATTTCCAAAAACTTTTATTGGAGAATCCGTGCAAACATCCCACAATCATCCTGCCCGCCGACATCATCTTCACCGATCTGAAAACCATTATTGATTTCGTTTATCGAGGAGAAATTGATGTCACCGAATCAGAACTACAGGGCCTCTTGCGCACCGCCGAACAATTAAAGATCAAGGGTCTCTGCGAAACTGCAGAGAATGCGGATGATTTAAACGACGCGGCCACAGCAACGATCACAGTATCGGAGAACATTCAGCAGGCGGTTGTGGGAAACATTGTGAATGCAACCATAGTTCCTGGAGCTCCTTCGCCCACCTTggaacagcaacagcagcaacaccatcAGGCACAGGGACAGGACCAGCAGCAGGTTCATgcccagcaacagcagcagcagcagcaaatcaACGCCGCCTTGCTGACGCAACACGGTGGAGTGCCAAGTGGCAGCAGTGGTGTTCCCCTATCCGGACAGTTGTTGAGTACCACAGCGAGCGCCAGTAGCGGTAGCTCCGGCTCCGGCGGACAGCAGAATACACTAACGTCATCCGGCCTACAGGCGACGCCACGCAAATCCCGGCTAAAGCGATCCAAGTCACCGGATTTGCCGACAGGTTCTGGGAGCTCTGGTGCCTCGAGCAACTCACAgtcacagcaacagcagcaaccgcAGCCGGCACACCATCATCCCCACCAGACCATTCTCATCCAGGGCCAGAATCCCACCTCGATTGTCAGCCTACAGCAGACGGCCGACGGCAATTATATACCGGTGGGAGCAGGAACTGGCGACGAATCGGACACCGAGAACGATCACGAGCACGAACACGAGCATATCCACGGACACGGACATCCgcacggacacggacacggccacagtcacagtcacgaCCACGATCACGATCACGAGCTCGAGAATAAACCGAACAAGATCTGCAAGACGGAACAGTCGGTGGCATCGCCGGCGTCCAATTCATCGAGCGCCAACTCAAACAATGCAGCGGGCGTGAGCGGCGGCGTGTCCACCACCGGCAACCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatGACTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTTACACCCGAGCCACCAGCACCATCCGCCACCCCAGTCACCGTTACGGAGCACGTCGATCTGTCCTGCAACCCCAGCACGGACACGCGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCCCAGCAAATACATCGGCTCGATCAGTCCCCCATGCACTCGATATCCCATCACCACACCGGTGACGAGAGCAACTCGAATCTGGTGCAGCACATCAAAAGCGAGGTGATCGAGGCCAAGCACCTGGCAGCGGCTGCCCAGCAGCATGCTCTCAACcaggcccagcagcagcagcaacaacagcatgCCCATCACCaagcccagcagcagcaccagcaacagcagcaccagcagcagcagcagcaacaacagcagcaacagcagcagcagcagcagcaacagcatcttCATGCCCAGCAGTTGCAGGcccagttgcagcagcagcagcaacagcagcagcaacaccaccagcagcaacagcaggcggcagcagcagcggccgcagcagcagctgctgcaggtGTGCATGGCCAACATGGGGGACACGTGACGCATGCCGATATTGGCGGTGCCACAGTCATGGAGATCGATCCGAGCCAAATTAAGCACGAACCGGGCATGATAATAACGCCAGAGATTGTCAATATGATGTCCTCAGGACATATGGACATGTACAATTCGGACACGAGCGAGGATTCAATGATGATCGCCAACGGCTCGCCACATGATCAGAAGGAGCCGCACTATACGAATTTGGACCAGCAGCACGGTCTGGGCGGCGGCAGCGTTTGTGGCCCGGGGCcaggtggtgctggtggtggtgggggCATGAGTGGTGGggctggctctggctctggcgaGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCATCCGCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCATGGAACGAGGATGCTCTGCAGAATGCCTTGGAGGCGCTACGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCCTTTGGCATACCCTCGTCGACGCTCTACAAGATTGCCCGAAGGGAGGGCATCCGCCTTGCGGCACCGTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGATCTGGAGCGTGCCTTGGAGGCGATACGGGCGGGTAATACATCGGTGCAGAAAGCAAGCGCCGAGTTTGGCATCCCAACAGgaacACTTTATGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCAACGCCCTGGTCCGAGGATGCCATGAACGAGGCCCTCAACTCTGTGCGTGTCGGCCAAATGTCCATCAACCAGGCGGCCATTCACTACAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGTGGCAAATACGATGTGGTGGCCAATACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAATACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGTTGCACATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCTCATCCGCCAACGCCGCAGCATCACAGCACGCCGCAGCATCATAGCTCGGCGCAGGGGCCGCCAACGCCGCAGCacatgcagcagcaacagcacgtGGTGCATATGCAACAGCAGTCGCCCCATCCGGGTCACCATCCGCAGCACATGCAGCAGGATGTGGTCACATCGAGCAGCCAGGTGGTGCAcagccaacagcagcagcagcttcagcaGATCTATCAGCACCACGGGACGCCGGAGCGTAGTTGA
- Protein Sequence
- MAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAPSPTLEQQQQQHHQAQGQDQQQVHAQQQQQQQQINAALLTQHGGVPSGSSGVPLSGQLLSTTASASSGSSGSGGQQNTLTSSGLQATPRKSRLKRSKSPDLPTGSGSSGASSNSQSQQQQQPQPAHHHPHQTILIQGQNPTSIVSLQQTADGNYIPVGAGTGDESDTENDHEHEHEHIHGHGHPHGHGHGHSHSHDHDHDHELENKPNKICKTEQSVASPASNSSSANSNNAAGVSGGVSTTGNQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIEAKHLAAAAQQHALNQAQQQQQQQHAHHQAQQQHQQQQHQQQQQQQQQQQQQQQQQQHLHAQQLQAQLQQQQQQQQQHHQQQQQAAAAAAAAAAAAGVHGQHGGHVTHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGGSVCGPGPGGAGGGGGMSGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSAQGPPTPQHMQQQQHVVHMQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00619072;
- 90% Identity
- iTF_00594628;
- 80% Identity
- iTF_00594628;