Basic Information

Insect: Drosophila seguyi
Gene Symbol: -
Assembly: GCA_008042675.1
Location: VNJU01010791.1:11985-18016[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0002 0.014 15.7 3.4 1 23 282 304 282 304 0.98

2 11 0.00096 0.07 13.5 10.5 1 23 311 333 311 333 0.96

3 11 9.7e-05 0.007 16.7 6.5 1 23 339 361 339 361 0.98

4 11 0.00044 0.032 14.6 1.6 1 23 367 389 367 389 0.95

5 11 2.1e-05 0.0015 18.8 0.5 1 23 395 417 395 417 0.97

6 11 2.1e-05 0.0015 18.8 0.1 1 23 423 445 423 445 0.98

7 11 0.00012 0.0086 16.4 2.0 1 23 450 473 450 473 0.97

8 11 0.0095 0.69 10.4 0.6 1 23 479 502 479 502 0.96

9 11 0.00016 0.012 16.0 0.1 1 23 563 585 563 585 0.98

10 11 0.014 1 9.8 2.7 1 23 710 732 710 732 0.95

11 11 0.0042 0.31 11.5 4.9 5 23 745 763 737 763 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0002	0.014	15.7	3.4	1	23	282	304	282	304	0.98
2	11	0.00096	0.07	13.5	10.5	1	23	311	333	311	333	0.96
3	11	9.7e-05	0.007	16.7	6.5	1	23	339	361	339	361	0.98
4	11	0.00044	0.032	14.6	1.6	1	23	367	389	367	389	0.95
5	11	2.1e-05	0.0015	18.8	0.5	1	23	395	417	395	417	0.97
6	11	2.1e-05	0.0015	18.8	0.1	1	23	423	445	423	445	0.98
7	11	0.00012	0.0086	16.4	2.0	1	23	450	473	450	473	0.97
8	11	0.0095	0.69	10.4	0.6	1	23	479	502	479	502	0.96
9	11	0.00016	0.012	16.0	0.1	1	23	563	585	563	585	0.98
10	11	0.014	1	9.8	2.7	1	23	710	732	710	732	0.95
11	11	0.0042	0.31	11.5	4.9	5	23	745	763	737	763	0.92

Sequence Information

Coding Sequence: ATGTGCGCCGCCCAGAATCCGCCGCCCTTCGGCTATACCTGGGGCTTTGCAGACAACGGCAGCCGCAACGCCGAATCTGTCCTGGAGATATCGCCGAACATCAACTACACGGTCAGCGGGGAGTCGATGCCCTATTTGTTATCCACGGATGGATCGTTGGCCGTGCAAAAGGATGTCAAAGGGCTCACCGGTGCCGGCAATAAGAATGTCGTGCGTCGCATGTTTGTGGTAAACGATCCCTCGTTTCCGCCAGGGACACAGAGGGTAATCACCGCCGGAGGATCGTCGACGGTGGTGAAGAAGCAGGACGCCAACCAGCAGGTGTTGAGCCTGGATAAGAACTaTCTGCTTGTGGATCCGGCcacggcagcagcggctgcagcggcagcgggcGGCGACCCGTCGGTGGCCCATCATCATCACACACTGGCGAATGGCAGCATTGTCGATGCCAAGACCGGACAGACGGTGCTAACCGCCGgctcggcggcggcagccaaGTCGCACTTCAGCTCCATCGGAGCGCTGCATCTAACGCAAGAGGAGTGCAACGAGATCCTGATCAAGCGCGCCATCGCTGCCGGCCATCATCAGACGCACACGGTCACCACTGCCGATGGCACGCACCTTCATGCGTCTGGCGGGACACCAAGTGACATACTTCCTGGTATTTCAGTTCAAGTACAGAAAGTAATCCAGGGACTCGAGGATAACGAGGACTCGCAGGGCGAAGCACCCAATTTAAAGTTGGAGCCAGGCACTTTGGAGCTGTCCCCGAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACGGACGCCACCATTAAGAAGGAACGCCCGTACAGTTGCGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCATCATCTGACAACCCACGCACGCGTGCACACAGGTGGTGAACGTCCCCACATCTGCACCCATTGCGGGAAGAGCTTCGCACACAAGCACTGTCTCAACACgcatctgctgctgcactcGACGGAGCGACCGTATCAGTGCCAGGAGTGCAAGAAGAGCTTCACCCTTAAGCATCATCTGCTGACCCATTCGCGTGTCCATAGTCGGGAGCGGCCCTTTGTCTGCCAGGAGTGCGGGCGCGCCTTTCCGCTCAAGCGTCATCTGGTCACGCATAGCAAGTTTCACGCCGGCGAACGACCGTACGTTTGCGAGGAATGCGGTGAGAGCTTTGCCCAGGAGAATCACCTGATTATGCACTCGCGCTTCCATGGTTCATTGAATCCATTCGTTTGCGCCGAGTGCGGAGCCTCGTTTCCACGCAAGTTCCAGTTGGTTAACCACGGACGTATTCACGGCAAGATCCCCCATTCGTGCACGGTGTGCGGCAAAGAGTTTCTACAAAAGCGAACGCTAGTTTCCCACATGAGACGTGTACACACTGGCGAGCAGGCGCATCCCTGCGTTAGCTGCGGCGAGGGCTTCCTCACCAAGGCCGAACTGCACCAGCATGTGAGGACGGCGCATAATGGCGTTAATCCCAATACGAGCAGTGCCACCATCATAGCCAATCAACAGCAGCTGCAACAGGCCCATCATCATCCGGGACAAACGCATCCACAGACCATTACTGTGGTTAGCAATCCGGCCAACTCCACGCTCCTGACTGTCTCTACTACGGATGCTAATGGCGTGGCCCGGCCACAGTTTGTGTGCCGCGAGTGCGGCAGCGCCTTCAATAGCCGAGAGGCCTTAGCTCTTCACTTGCGTCTTCATACTGGTGACAAGAGCCTTATGACCGATCTGTGCGCTTTGACAGCCGCCCTGCCGGGTCACTTTTTGAGCACGGCCAGCTTGAATCCGGGTACCGTGGTCACGGCCAACCCGAATCTGGTGGGCCAGAGCCCAGTGCCCGTGCAGATAATATCGTCGACCGGGCAGGTGATGTCGCAGACCACGCTGGTGCAGGCCGCCAACTCGACCCATCCGCAAGCCGTGGTCACCGCAGTGCCGACTATGCCTGTgcatggccagcagcagcaccttcAGCAcgtacagcagcagcagcagcaacagcagcaacaacagcaacagcagcagcagcagcagcacgtcGTCTCTGTGGCGCCGGCCAACAAGCCCAAGTCGCATTTCTGCGCCAGCTGTGGCAAAGGATTCGCAGCCAAGCACGGCCTGATGCAGCATAATCGGCGGCATCCGAACGGCGGCTGTACGGTGCGCACCCATGTGTGTGAATGCGGCAAGGCCTTCTTCCAGAAGAACCACCTGATGCTGCACCAGCGCCAGCATCTGGAGACGAAGCCAGCCATATCGCAGCAACAGGTATGCTAG
Protein Sequence: MCAAQNPPPFGYTWGFADNGSRNAESVLEISPNINYTVSGESMPYLLSTDGSLAVQKDVKGLTGAGNKNVVRRMFVVNDPSFPPGTQRVITAGGSSTVVKKQDANQQVLSLDKNYLLVDPATAAAAAAAAGGDPSVAHHHHTLANGSIVDAKTGQTVLTAGSAAAAKSHFSSIGALHLTQEECNEILIKRAIAAGHHQTHTVTTADGTHLHASGGTPSDILPGISVQVQKVIQGLEDNEDSQGEAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTERPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCAECGASFPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRTAHNGVNPNTSSATIIANQQQLQQAHHHPGQTHPQTITVVSNPANSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLVQAANSTHPQAVVTAVPTMPVHGQQQHLQHVQQQQQQQQQQQQQQQQQQHVVSVAPANKPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQVC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00481685;
90% Identity: iTF_00594698;
80% Identity: -