Dsal000098.1
Basic Information
- Insect
- Drosophila saltans
- Gene Symbol
- -
- Assembly
- GCA_018903575.1
- Location
- JAEIGH010000024.1:2034362-2037585[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00022 0.025 15.6 0.8 1 23 242 265 242 265 0.96 2 17 0.0011 0.12 13.4 1.2 1 23 271 293 271 293 0.98 3 17 0.42 47 5.3 0.8 2 23 325 346 324 346 0.93 4 17 0.00011 0.012 16.6 0.7 1 23 427 450 427 450 0.97 5 17 0.18 20 6.5 0.7 1 19 457 475 457 478 0.93 6 17 0.035 3.9 8.7 3.8 1 23 487 509 487 509 0.95 7 17 3.2e-06 0.00036 21.4 0.6 1 23 516 539 516 539 0.97 8 17 9.3e-05 0.01 16.8 1.4 2 23 547 568 546 568 0.96 9 17 0.05 5.6 8.2 0.1 3 21 596 614 596 615 0.96 10 17 0.0057 0.64 11.2 2.0 1 23 673 696 673 696 0.96 11 17 0.23 25 6.1 0.5 1 23 733 756 733 756 0.89 12 17 0.00013 0.014 16.3 1.6 2 23 795 817 794 817 0.95 13 17 0.0003 0.034 15.2 1.0 1 23 831 853 831 853 0.95 14 17 4.3e-05 0.0049 17.8 2.1 1 23 859 881 859 881 0.99 15 17 9.7e-07 0.00011 23.0 0.7 1 23 887 909 887 909 0.98 16 17 7.8e-05 0.0087 17.0 2.3 1 23 915 937 915 937 0.97 17 17 3.2e-05 0.0036 18.2 0.6 1 23 943 967 943 967 0.90
Sequence Information
- Coding Sequence
- ATGAAGCTGCCGATTGCCTGCCGCACTTGCGATGCTAGTGCTAAGGAGGCGGACAAGCTGTATAATCTAGCCACGCCTAGTAAGGAATATCCGAAAAAATTGCTGTCGGAGATTCTCGTTGAATTAACCAATATCGATCTGGAGATGCATCTTCCCAGATACCAGTATATGCCGCAATCCTTGTGCAGTTGTTGCTTGGAAAAATTAATGGCTTCTTATGACTATGTGAAACAAGCCTTGTCTGCCAACGCTTTGCTGATGCGGCAGGTACAACACTTCTCGAAGCAAACGACATCTGTTAACACGAACGATTGCCTGCAAGAGTCACCAATGGAACTTTGTGCGGAGCAACATGTGGAAGTTAAAATGGAAACAGAAGGTGATGACAGCGACAGGGAAAATGGGGAAATCGGCGACCCAGGAAAAATCACCTGCACTGAGTTACCCAGTCTAGAAGAAGCTGACATTGCTGGAGGTGATGATGAGGCGATAAAGAGACCAATAGATCCTTTGATAATGCTTGATACGATAGCAGTTAAAAAGGAAAATGACACACGGCCAAATTTAGAAGGGGAAGGTGAAATGGGTAATGCTGACTATGAAGTTGACGAATTCGAGCCCGACGATGATGAGGATGACTCACTTGATAATATACCACTGCAACAACGAATTTTAAAGTGGAAAAAGAAGCGAGGTGACCATAAATTGACCAGACGACGTCCTTTTCAATGCAGTGAATGTGCCAAAAGTTTTATAAGTGGCGAATCTTTAAAAAAGCACAAGTCCAGGGTACATCAGGCTTCTGGCCTCTTTTCTTGCTCCCTTTGTATAAGGAAATTTAATCGACAAGAAACGCTAGAGTCTCATCTAAAGATACATAGTGAATCCAAACGTTCATCGCATATCAGCGAACATAAGAAGGCCAAATCAATAGATGTCAATCTTTGCAAGCCCCATGGCTACAAGCTTATCGAGTGCATGATATGTCAGAGTCAATATCACAAAATATCCGATTTGCGTCGCCATTTAGAGGACCACCCGCCAATTACGACTCTGGCCAAACGTCCTAATGTGGAATCTTTGGCCGATTTTTTCTATCCGGACTCCAAAAATATATGCGAAGGACAACTGAAGCAATTGATTCGACAGGATTTAATGGCTGGCCAATTTCAACGATTCTATTCAATAACCAATCAATCTGGCTATGAGATTGATCTGGACAGTTCAGAAACCGACAGCGAAGGAGAGATGGAGCTGGCGTCAAAATTTGATCTGGAATACAATTGCGAGCTGTGTCCGCAGAGATATGCGCGAAAATATCAGCTTTACGAACACCAACGTCAAGCGCATCCCTGGTTGGAAGCTCCCCATGTCTGTGGTCGTTGTCAGGCCAGATTTGTTAGTCTCCAACTGTTGCGGCACCATAATGAGTCGCAGTGCCGTAATGCTCAGAAGAGGTTTCTTTGCTACAAGTGTCCATTACGGTTTCGTTGGAAGCATAACTTCAGAAGTCATATTCGGGAGCATCGAATTACTAATCAAACTTTTGAGTGCCCTAAATGCAAGCGTGTTTTCGACAACAAAAAATCTCTCACAGTTCATTTGCTTAGCGTTCATGCCGATGAATCAAAGCTGCTCCCCTGTCAGTGGTGCAGCCGCAAGTTCTACCGACGCGACTATCTGGTCAAGCATTTGAAACGTCATGGGTTCAAAGAACAGGACATTCCGCTAGCAGAGACTTTAATAGCTGCGACTTCGAAACCCAATGGTGTTAAACGAATTTGGTGTAAGATCTGTAATTCACAGTTTGACCGTATACGTGAGCTTCGTGCCCACATCCAACTGGAGCTGGGTTTGAAGCTGTCCATTTCGTCACCAGCATTAGAGCAGGCGAATATCGGCTCACCCCTTAACTATTCCATTACTAATGAATCTGGATTTGAGCTGCAATTGGACGATTCGGAAACAGAAGATGAATTACTATTGCCGGCAGTTACTGGCGGTTATCGTGGGGGCTATATGTGTGAACTGTGTAGTATACAGTGTCGACGCAAATACGAAATGATCCAGCATCAACGGGCAATGCATCGTTTCGATAAGATGCCTTATGAGTGCGAAACGTGTATCTTTAAATGTGTGTCCAAGAACATTATGGAACATCATCGGTTGGGTCAATGCGGTAGCTTGGAAAAAAAACATGCATGCACTCAATGCAGCTACAAATTTATGTGGCCAGAAAATCTAGAAAACCATCTTGTCCTGCAGCATGGCCAGAGTTCTTCTACAGCTAAAGAGCAGCTGATAAATACCAATGATCTTCCGTTGAAAAAATCCAGTACCAAAAAAGAACAATCTCAATCACAAATCCATGTCCAGCTGCTTCAGTGTCCACATTGTGATCGGACTTATCAAATGAAGTCCCGTCTAAACAATCACATCCGCGATGTTCATGTGAACGGCGATCGCAAGCGGAAAGAGGCCGAAAAAAAATTTCTATGTTCGCTTTGCGGCCGTGCAACAAAGACGGCTGCTTGTCTAGTTACCCATATTCGTCGTCATACTGGTGAGAAGCCCTTTAAATGTGATTTTTGCGAAATGGCCTTTCCCAGACATTCTGAAATGACCGCACACCGACGCACCCACACAGGAGAAAAACCATACAATTGCACAGTTTGTGCAAAAAGCTTTGCTCGTTCTGACAAGTTAAAGCGACATATGCTTATCCATAGTGGTTTGAAACCGCATTCCTGCGGATATTGTGAAAAGAGCTATCGCCAAGCGAAAGACCTTAAATTGCATTTGCAACAGCATACCGGAGAGTCCACCTTCATCTGTGGCACGTGTGGAGAAAGGTTTATACAAAGTAGCACACTAGAAAAGCACCGCATGATGCGGCGCCATTTTGATGAAGTCGAAGCGACGTCAATGGCATTAACACGAACTTAG
- Protein Sequence
- MKLPIACRTCDASAKEADKLYNLATPSKEYPKKLLSEILVELTNIDLEMHLPRYQYMPQSLCSCCLEKLMASYDYVKQALSANALLMRQVQHFSKQTTSVNTNDCLQESPMELCAEQHVEVKMETEGDDSDRENGEIGDPGKITCTELPSLEEADIAGGDDEAIKRPIDPLIMLDTIAVKKENDTRPNLEGEGEMGNADYEVDEFEPDDDEDDSLDNIPLQQRILKWKKKRGDHKLTRRRPFQCSECAKSFISGESLKKHKSRVHQASGLFSCSLCIRKFNRQETLESHLKIHSESKRSSHISEHKKAKSIDVNLCKPHGYKLIECMICQSQYHKISDLRRHLEDHPPITTLAKRPNVESLADFFYPDSKNICEGQLKQLIRQDLMAGQFQRFYSITNQSGYEIDLDSSETDSEGEMELASKFDLEYNCELCPQRYARKYQLYEHQRQAHPWLEAPHVCGRCQARFVSLQLLRHHNESQCRNAQKRFLCYKCPLRFRWKHNFRSHIREHRITNQTFECPKCKRVFDNKKSLTVHLLSVHADESKLLPCQWCSRKFYRRDYLVKHLKRHGFKEQDIPLAETLIAATSKPNGVKRIWCKICNSQFDRIRELRAHIQLELGLKLSISSPALEQANIGSPLNYSITNESGFELQLDDSETEDELLLPAVTGGYRGGYMCELCSIQCRRKYEMIQHQRAMHRFDKMPYECETCIFKCVSKNIMEHHRLGQCGSLEKKHACTQCSYKFMWPENLENHLVLQHGQSSSTAKEQLINTNDLPLKKSSTKKEQSQSQIHVQLLQCPHCDRTYQMKSRLNNHIRDVHVNGDRKRKEAEKKFLCSLCGRATKTAACLVTHIRRHTGEKPFKCDFCEMAFPRHSEMTAHRRTHTGEKPYNCTVCAKSFARSDKLKRHMLIHSGLKPHSCGYCEKSYRQAKDLKLHLQQHTGESTFICGTCGERFIQSSTLEKHRMMRRHFDEVEATSMALTRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00600468;
- 90% Identity
- iTF_00577934; iTF_00483861;
- 80% Identity
- iTF_00577934; iTF_00483861;