Drub010489.1
Basic Information
- Insect
- Drosophila rubida
- Gene Symbol
- L
- Assembly
- GCA_035046165.1
- Location
- JAWNOF010000022.1:4210553-4220220[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.7e-05 0.0022 18.1 2.9 1 23 187 209 187 209 0.98 2 17 0.37 22 5.6 6.2 1 23 215 237 215 237 0.97 3 17 1.8e-07 1.1e-05 25.4 3.2 1 23 243 265 243 265 0.99 4 17 1.3e-05 0.00078 19.6 0.4 1 23 271 293 271 293 0.99 5 17 0.058 3.4 8.1 0.1 2 23 370 394 369 394 0.89 6 17 0.0011 0.067 13.5 0.2 2 23 416 438 415 438 0.95 7 17 0.029 1.7 9.0 0.7 1 23 523 545 523 545 0.97 8 17 0.0037 0.22 11.9 0.1 2 23 553 574 552 574 0.92 9 17 0.00024 0.014 15.6 0.1 2 23 583 607 582 607 0.89 10 17 5.4 3.2e+02 1.9 1.7 2 23 643 665 642 665 0.95 11 17 0.0027 0.16 12.3 1.1 1 23 714 737 714 737 0.97 12 17 0.0017 0.1 12.9 1.8 2 23 921 943 920 943 0.96 13 17 0.12 7.2 7.1 0.1 1 23 949 971 949 971 0.92 14 17 0.59 35 4.9 0.4 2 23 979 1000 978 1000 0.93 15 17 0.79 46 4.5 0.5 2 23 1103 1124 1103 1124 0.94 16 17 0.38 22 5.5 0.0 1 23 1134 1156 1134 1156 0.92 17 17 0.00024 0.014 15.6 1.2 1 23 1161 1183 1161 1183 0.97
Sequence Information
- Coding Sequence
- ATGATggctttaaaaatgttatatcGCGGTCCCAGTTCGCGTTTGGAGAACCTAATTGAGAAGATTCAAGCCACGAAGGAGATTTCGAATAACGACATGTACAGCACTCACACCTCGTCCAGCTACTCGCCCAGCATCTCGGACGGCACTTTGACGCCCAActcgcagcagccgcatccgCAGCTCTTGGCAGCCGGCGAGGATCCAAACGCCGAGCAGTCCAAGCTCAACGGCGACACCGCCACAACAGCCGCCGCcgacgaggagcaggagcgcgaccgggagcgggagcgggaacggGAGCCACCCAAGCTGAAGCGACCCGCCCACCtgcaccaccatcaccatcatcactATCACCATCAGCAGGCGCTGAAAATTGCCAACAAGCTGCGGAAAATCAATAAGGAAGCCAAGCTCTCAGgacccacagcagcagctggcggtggcggcggtggcgggggaggagctggagcgggaggcggcaacagcggcgcagcagccgcaaagtTTGATAAGTTGACAGGCGACGGCATTAAGAGCCGCGGCGACGGCTCCTATCAGTGTCAGTTCTGCGAGAAATCATTTCCACGACTCGGTTACTTGAAGCATCACGTCCAGAGCCACGCCGAGCATTTGCCATTCAAGTGCGAGTACTGCGCCAAGCTGTTCAAGCACAAGCGTTCCCGCGACCGCCATAAGAAGCTCCACACCAACGAAAGGAACTACAAGTGTCCGCACTGCGAGGCCGCTTTCTCCCGCAGCGACCATCTGAAGATCCACATGAAGACGCACGACATCCAGAAGCCGTTCCAGTGCAGCATGTGCAACCGGGGCTACAACACCGCCGCCGCGCTCACCTCGCACATGCAGAAGCACAAGAAGAACGCCGCCATTCTCGCAGCCGGCGGCAACCCCAACGCCCTCAACTACAGTCCGCGTAGCACCGGCTCCGCCTCGGCCTCGGCCGCCTCCATCTCGAGCAACGGCAGCCTGCACAAGCGCCGCTACGCGCTCGCCCTCGCCTCCGACAGCAGTCCCAGCCGCCTCGACTACCCGAAGCGCAGCcgcggccacgcccacccgccaacgccgacgccgctgctgcgctgcagctaCTGCCCCAAGCCAGTGGAGTTCAGCAGCCTGGAGCAGCTCAACGCGCACCTGCAGCAGGCACACGAGCAGCCCACAACGGAGCCGAGCGAGGCGGAGGCCAAGGCGCAGGCGAACGGCTTCCAGCTGAGCTGTGAGTACTGCACGATGCGCTTCGCCAACATTGCCGGCCTGTTCCAGCACATGCGTGCCACGCACCTGGATCGCCTGAGCAGTCCCAACTCCTACTACGAGCACTTCAATCGGCTGGCCACGGCGGGCACGTTTAGTCCGCGGCTGGCGCTCGAGCTGCCGCCGAAGATCAAGCCCGACCTGGGCAGTCCGCAGCGTGAGGCGGCGCTGGAGAAGCCCGAGCAGGAGCTGCCCACCGAtctgagcagcaacaagcggcGCACAGTGTCGCCCCCTGGCGGCCCAGCAGCGGTCGCTGCGACAGCGCCACCTGGCGTCTTCTTCTGCAACCAGTGCAACGCAGGGTTGCCGGACTTCGAGAGCTTCCGCAACCACCTGAAGACGCACATCGCCGAGGGCATGCAGCTGGTCTGTCCACACTGCGGCCTCAGCCTGCCCGAGCAGAGCGAGTTCGAGCGGCACGTGGTGGCGCACTTCCTGATCGCCAGCTGCGAGTTCAACTGCGCCGCcggcagctgcggcaagtCGTTCGCCAAGGccgacgagctgcagcagcacctgaACAGCGACCACGTGCTCACGCTGCTCAAGTGCGCGCTCTGCGCCGAGATCTGCGAGACGCGCATGGCCATGCAGCTGCACCTGGCCTGCGCCCACGGCCAGGAGACgaagctgctgcgctgcagcgcctgcCTCGAGCTCTTCCGCACCGACACCGACTTCCACGTGCACGTGAAGACGCGCCACCCGCTCGTCGCCGGCCACCAGCCTCCGGCCTCCGCGGCTGCCGCTCCCCCTGCGCCCGGCAATCCGCTGCAGTGCATGTTCTGTCGCGCCGTGTGCGCCTCCGAGCTGGAGATGCACTTCCATCTGGCGGCGCACGCGCGCCAGTTCCGCTGCCCCTCCTGCCCGGAGACCTTCCACGTCGAGTTCCTGCTCGACCGCCACATGCAGAGCCAgcatggcggcggcggagggggCGTCAAGGAGCGCACGCCGCCCAAGGACAGCTCGCCCAGCATGGGCAGCCTCTACGTGaacgcgctgctgccgccgctggccgccgccgcagccgccgccgctgcagcgagcgcgacgaacaacaacagcagcctgCACATCGACTACAACGTCGCCTTCAAGGGTCTCTTCGGAGGCGCTGGAGCTGCGAGCGCAGGAGGCGCGCCTGCTGGCAAATTCTACAGTCCGCTGCAGGTGGACACGAGCGGACTGAAGGCGCAGCAGCCGTCGCCGCACCCGGCGCTCATGTACGGCCTCAGCCAGCGCTACCTGATGGAGATGTACGCGGCCAAGGCGACGTCGCCGGCGGCGGGCAGCGCGCCCGAGGCGCCCGCGCAGTCGCCCGCCCAGCAGGCAAGTGGGGGAACGGCGGCTGGcaatgcgagcagcagctacagctgcgGCATGTGCGAGCGGCAGGATCTGCGCAGCGAGGCGGAGCTGCACTCACATCGGAAGCTGGCGCACAACCTGAAGACGGGCGTCAGCCTGCGCTGCGCCTACTGCTCGGGCAACTTCAAGTCGCGCgcggagctggagcagcacatGAAGAGCTGCCACAACTCGAGCGGCAAGCACAAGTGTTTGATCTGCGACGAGATCTTCCCCTCGCCCGCCATCCTCGCCGAGCACAAGCTGCAGCACTCCAAGGTGGGCCAGTCCGGCAAGTGTGCGCActgcggccagcagctggagcacgTCGCCGCCTTTCGCGCCCACCTCGGCGAGcacggcggcgacggcaaccTGCCGCTCGCCTGCATCTGCTGCCGCCAGACGCTGCACTCCGAGTTCGAGCTCAGTCTGCACGCCAAGTTCCACACCAAGtccagcggcggcaacggcgccGGCATCGTTGGCGGCGGCAATCTGCAGGAGCCGGTGTGCGCACTCTGCCTGGAGCCGCTGCCGGGCGCCGGGGAGACGGCCAAGCTGTGCGACAAGTGCTGTCGCAAGCACAACCTCAATCTGAATGGCAAGCGCAGCAAGGAGGCGCCGCCGAGTGCTGGCCACGCACCAGCCGGCTACCTGGAGAACCGCTGCAACCTGTGCAAGATGATACTGCCGCACGCGCAGAAGCTGCAGGAGCACCTCGTCGAGCACACGTTCGCGGGCACCGAGCAGCGCGGCTTCAACTGCTACATCTGCTCGGCGGTCTTCACGGCGCCCGCTGGCCTCCTAGGCCACATCGGGGAGCACGGCGCGCGGCCCTACGACTGCAACCTCTGTCCCGAGAAGTTCTACTTCCGCGCCGAGCTGGAGCACCACCAGCGCGCCCACGAGCTGcgccccgccccgctgccagctgcagcccCAATTCCACTTCCTGTGCCAGTGCCAGCTGCGCGCGTTGCCAAGCAGGAGACGCGCAGCTCGTCGGCCAGCTCGCCGCTGGCGCTCAGTCCGAGCCGCGTCAAGCAGGAGCTGTACGAGTCGGAGACGGCCGGCTCGCCGCCCGCCCACGCTGCCGAGGCGCCGCCGCAGGACGACGAGGAGTACATCGAGGTGGAGCAGATGCCGCTCGAGACGCGCGCCGCCGAGCTGCTGACTGCCGCGCACACCGAgcgctccagcagcagcgcctaa
- Protein Sequence
- MMALKMLYRGPSSRLENLIEKIQATKEISNNDMYSTHTSSSYSPSISDGTLTPNSQQPHPQLLAAGEDPNAEQSKLNGDTATTAAADEEQERDREREREREPPKLKRPAHLHHHHHHHYHHQQALKIANKLRKINKEAKLSGPTAAAGGGGGGGGGAGAGGGNSGAAAAKFDKLTGDGIKSRGDGSYQCQFCEKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASASAASISSNGSLHKRRYALALASDSSPSRLDYPKRSRGHAHPPTPTPLLRCSYCPKPVEFSSLEQLNAHLQQAHEQPTTEPSEAEAKAQANGFQLSCEYCTMRFANIAGLFQHMRATHLDRLSSPNSYYEHFNRLATAGTFSPRLALELPPKIKPDLGSPQREAALEKPEQELPTDLSSNKRRTVSPPGGPAAVAATAPPGVFFCNQCNAGLPDFESFRNHLKTHIAEGMQLVCPHCGLSLPEQSEFERHVVAHFLIASCEFNCAAGSCGKSFAKADELQQHLNSDHVLTLLKCALCAEICETRMAMQLHLACAHGQETKLLRCSACLELFRTDTDFHVHVKTRHPLVAGHQPPASAAAAPPAPGNPLQCMFCRAVCASELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGGGGGVKERTPPKDSSPSMGSLYVNALLPPLAAAAAAAAAASATNNNSSLHIDYNVAFKGLFGGAGAASAGGAPAGKFYSPLQVDTSGLKAQQPSPHPALMYGLSQRYLMEMYAAKATSPAAGSAPEAPAQSPAQQASGGTAAGNASSSYSCGMCERQDLRSEAELHSHRKLAHNLKTGVSLRCAYCSGNFKSRAELEQHMKSCHNSSGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCAHCGQQLEHVAAFRAHLGEHGGDGNLPLACICCRQTLHSEFELSLHAKFHTKSSGGNGAGIVGGGNLQEPVCALCLEPLPGAGETAKLCDKCCRKHNLNLNGKRSKEAPPSAGHAPAGYLENRCNLCKMILPHAQKLQEHLVEHTFAGTEQRGFNCYICSAVFTAPAGLLGHIGEHGARPYDCNLCPEKFYFRAELEHHQRAHELRPAPLPAAAPIPLPVPVPAARVAKQETRSSSASSPLALSPSRVKQELYESETAGSPPAHAAEAPPQDDEEYIEVEQMPLETRAAELLTAAHTERSSSSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00507081;
- 90% Identity
- -
- 80% Identity
- -