Drub009729.1
Basic Information
- Insect
- Drosophila rubida
- Gene Symbol
- retn
- Assembly
- GCA_035046165.1
- Location
- JAWNOF010000021.1:34300868-34320413[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4e-26 7.5e-23 80.5 0.0 2 89 307 392 306 392 0.96 2 2 1.8 2.5e+03 -1.3 0.7 10 45 558 594 520 607 0.60
Sequence Information
- Coding Sequence
- ATGGAATTTGTGCAGCAGTCCCACGGCGATCGAACGGACGACGAGAtgcgcgactgcgactccgtcGACGGGGAGCACCATCAGCTGAGCGCCAAGGCGGCAATTGCCGCCCGTCTCAGCCACACAGTCGCCGGCGGCGCTGGCCTCAACTTCGCCAGTCCCGAGCAGCAAACAGATCTGCCACACAGCCATCACCATCAGCTGCCCCCGAATCACCCGCTCAATGCGCTGGGCAGCTTCATGGGCATCAGCGGACTACACAGCATTCCAAATCTACAGCACAGCGATGTGCTCGAGAAGCTCAAGATGCAAGTGCGTGATATGAAAGTCGGTCTCATGGAGCAGGACTACGCTGCGGCGGCGCATGCAGCAGCCTTCGGTGCCAACATGCTGCCCACCACGATCGGCTCGGCCTTTCCACTGCCCCACAACTCGGTGgccgcagctgcggcagctgcatcCTTCGCGCCCGTGCCGCCCGCCAGCAACGGCGCCAGCTACAACGGCGCTGCCAGCGGCGGCGGAGCTGGGGCAGCTGCggccgcggctgctgcagccgctgctgccgccgtcatGGCCGCCAAcacggccaacaacaatggagCCAACAGTGGTGCAGGCGGGGGAGGTGGAGGAGCCAATAGAGACACAGGCAGTGCTGTCAGtggcaccaacaacaacaacaacaacaacaacaacaacaacagcagcagcaacaacaacaacaacggcggcggcggcggtcaTCCTTTCTCATTTGCATCGCCGACAGCGCCAAGCGCCAAAGAAGCTAATTCCGCATCGAATTCATCGACGTCCAGCGAGGCATCCAATTCATCGCAGCAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATCAACGACGATCCGAAGCGCAAGGAGTTCCTCGAtgatttgttttcgtttatgCAAAAGCGCGGCACGCCGATCAATCGGCTGCCCATCATGGCCAAGTCGGTGCTGGACCTGTACGAGCTGTACAACCTGGTGATAGCTCGCGGCGGCCTCGTCGACGTGATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGGCTGCATCTGCCGTCGAGCATCACCAGTGCGGCGTTCACACTGCGCACCCAATACATGAAGTATCTCTACCCGTACGAGTGCGAAAAGAAGAACCTCAGCACCCCGGCCGAGCTGCAGGCCGCCATCGACGGCAACCGTCGCGAAGGACGCCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAGATTCCACTGACGCCCATTTCACGCCCATCACTGCCgggtggcatgcaacaaatgTCGCCACTGGCGCTGGTCACACAcgcggcagcagccaacaaccagcaggcagcggccgccgcagcagccgcacaccGACGATTGATGGGCGGCCCGGCATTTGGCCAGATGCCCAATCTGGTGACACAGGAGATTGAGAACCGCATGATGGAGTATCTGCAGCTCATACAGGCCAAGAAGGAGCAGGGTGCTGGCCCCGTGCTCGGCGCCACACATccccaccagcagcaacagcagcagcagcaacagcagcagcagcagcaacaacagcagcagcagcaacagcagtcgctgcaccaccaccaacagcaacaacagctgcagcagcagcagcaacaccagcgaCAGCGCTCGCAGAGCCCCGAGCTGAGCACGCGTGATGCGCTCAGCGCGCAGGTGGCGCTCTGGCATATGtaccacaacagcagccccAATGGCTCGGCACACACCTCACCACAGCAGCGCGAAGCCTTGAACCTCTCCGACTCGCCGCCGAATCTGAATCTCAGCCACATCAAGCGCGAGCGCGAACGTGATCCCTCGCCGGAGCCGACGGATCACGAGGATGCTGCGCATCAGCCGCCGCCAGCCAAACGAATGGGCAGCGGCCTGATGCCGCCCGGTTTCCCCGCTAACTTCTACTTGAATCCACACAACATGGCCGCCGTGGCGGCCATCACCcatcaccaccatcaccagcagcaacagcagcagcagcagcaggacgccGTGTCCGAGGGCGAGCCGGAGGATGACTACGGCAATGGCGAGCACAACACCACTGGCAACTCGTCGTCCATGCACGACGACATcgagccacagcagctgaacggacatcatcatcaccaccaccatcatctgcaccaccaccaccagaaCCATCTGGACAAGTCGGACGATTCGGCGATCGAGAACTCACCCAGCACTTCCACCACGGCCTCCGCATCGGGCGGCCATCGTCACAGCTCGCCGGTGTCCACCAAGAAGAAGAGTGCCAGCAGTAAAGCTCAGACCACAGACGACAAGGATGCCGAGCACGCGAACTGCACGGCAAATGGTGGCGCGGCCAAGCTGAGTCCCCTCGAGACACTCAGCCTGCTGTCGGGCATGCAGTTTCAAGTGGCACGCAACGGCACTGGCGCCAACGGTGAGCAGCAGTTGATTGTCAACCTGGAGCTCAATGGCATTAAGTACTCGGGTGTGCTGGTGTCCAATGCCACCAGCGTGGAGCCCACAGTCGACGCGGACGCGGACACACTAAACGCTGCTGCCAACGCCGAGGAGCCGGCGGCCGAGGAGGCCAGCAATGTGGTCAAGCATGAGAATAGCCAAGAAGTCAATCAGAACGAGCCCgtcgacgaggacgaggagggGGAACAGTCCACCGACGAGGCTGTGAATGGTGTGGGAGTGGCTGGTGGTGTTAGTGGTGGCAGTGGCGGGGCTGTGGCGGTGGGCGTCTCTGTGCTGAAAGATGCGGTGGTCAGTTCGTAA
- Protein Sequence
- MEFVQQSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGAGLNFASPEQQTDLPHSHHHQLPPNHPLNALGSFMGISGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTIGSAFPLPHNSVAAAAAAASFAPVPPASNGASYNGAASGGGAGAAAAAAAAAAAAAVMAANTANNNGANSGAGGGGGGANRDTGSAVSGTNNNNNNNNNNNSSSNNNNNGGGGGHPFSFASPTAPSAKEANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQIPLTPISRPSLPGGMQQMSPLALVTHAAAANNQQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQGAGPVLGATHPHQQQQQQQQQQQQQQQQQQQQQQSLHHHQQQQQLQQQQQHQRQRSQSPELSTRDALSAQVALWHMYHNSSPNGSAHTSPQQREALNLSDSPPNLNLSHIKRERERDPSPEPTDHEDAAHQPPPAKRMGSGLMPPGFPANFYLNPHNMAAVAAITHHHHHQQQQQQQQQDAVSEGEPEDDYGNGEHNTTGNSSSMHDDIEPQQLNGHHHHHHHHLHHHHQNHLDKSDDSAIENSPSTSTTASASGGHRHSSPVSTKKKSASSKAQTTDDKDAEHANCTANGGAAKLSPLETLSLLSGMQFQVARNGTGANGEQQLIVNLELNGIKYSGVLVSNATSVEPTVDADADTLNAAANAEEPAAEEASNVVKHENSQEVNQNEPVDEDEEGEQSTDEAVNGVGVAGGVSGGSGGAVAVGVSVLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502302;
- 90% Identity
- -
- 80% Identity
- -