Drob011287.1
Basic Information
- Insect
- Drosophila robusta
- Gene Symbol
- -
- Assembly
- GCA_004143805.1
- Location
- SCDV01001968.1:11323-13064[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.1e-16 4.1e-12 46.2 0.0 2 45 372 415 371 415 0.95 2 3 0.034 1.5e+02 2.7 0.0 28 37 445 454 444 459 0.90 3 3 2.1e-19 9.7e-16 57.8 0.0 2 42 481 521 480 523 0.96
Sequence Information
- Coding Sequence
- ATGAATCACCTAAAATGGATGGGCCATTCGTCCACAATAATGGATATACAGCGCGTTCTACTGGACCAGCAGAGCAACAATCAACAATGCGAGGTCTTGCTCGTGGCCAAAGACGGCATCAGTGTGCGCGCCCATCTCTTCGTGTTGAGCACGTGCAGCGATCTGATGCGCAATTTGCTAGTCGATTTGCCCGCCGGCCAGGAGGCGACTGTCATCCTGCCCGACATCCGGGGTGAGCTGCTCGAGAGCATGTTGTCGTTTATTTACATGGGCGAAACTAGCTTACCCTCTACCCTGCTCACCGAGTTTTTGGAAGCGATCAACCTATTGGGCATCAAGTCGGCCATTAGTTTTGAAACTAATCCCGCAGCCGTGACCACCTCAAATGTTATTAGCGGCGCCATGGCTGTCGAGGCGGCCAAGTCAATTAGCGGCTTACACATTGCGAATACAGCCCTCatggaggaggagggggaggaAGAAGACCCTGACGCTGTGGTCGATAAATTGGAGGTGGGAACTGCTGTGCTCGCCAATGCACAACACCAGCACCACGAGCACGATGGCCGAACGTTAGAGTTCCTGGATATGTACGGCGATCAGCCCAAAATCACGTATTCCATTGAGCACATGGGCGGCACAAGCAGTggaaatcaatatatattaacgGAGAACACAGGAACATTTACAATCACACAATCTGCATCGTCCGTGGCCAAGTTGGGTGTATCGGGGTCTTCGGCTGTGGATACTGTGGCGACCGGTGATCTGGGCGACGACGATGTAGAGGCTGATGTTACTGACGAACACGACGAGTCCGAGTCACAGCTAATCGAAGAGGAGTATGTTGCCTCCGCAGATCCTCTAATAGAAATGTCCGGGGATGCGGATGGGGATGTTGATATGACCGAAGACGGAATGCACGAAGATGCCGGGGACGAGGAGGAAGATGACGAACTACTGGATGTCAAACCGCACAAAGTTCAGCTTGATATGAAGATGTTAAAAGCAAAGTCACGCCAGCGGTCGCCATCGTCGAAGACTACAAAAAAGACAATGACgaaacagcatcagcagcatgcCGCATTCAAAAAGGAAATGAAGGACGATATCAATGATGCCCTCGAATTGGCCGCTTCGGCAGTGCTCCATGAAGGGCTTAGTCTTCAAAAGGCCGCCGATCGTTTCGACATATCGAAAACCGTGCTATGGCGACGTGTACGCTCTAATCCAGCCTACATGCGAATAAAACGAGAAAAGCCATCGCTATCGGAGGCATACGAGCGTTTGAAGAGCGGCGACTCGCTGAAGAGCATTAGCCAGGATCTGCACATACCCATGTCTACGCTGCACCGGCACAAAGTACGGCTGGCGGCACAAGGTCGTCTACCCGATTTTGTTTCCTGCCGGCGGCGGGATAGCACCCCGAAAGACGAGCTGCGCGACAAGCTGGCCAAGGCGGTGCACGCCTGTATAAACGATGGCATGTCCCAAAATCATGCGGCAAATCTCTTCGAAATTCCCAAGAGCACGCTGTGGCGGCACTTGCAACGTCGCGTTACCGAGGCGGAGCGTAAAGTgaaggaggagcaggaggaagACGAAGATGAAGACGtactcaattaa
- Protein Sequence
- MNHLKWMGHSSTIMDIQRVLLDQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLESMLSFIYMGETSLPSTLLTEFLEAINLLGIKSAISFETNPAAVTTSNVISGAMAVEAAKSISGLHIANTALMEEEGEEEDPDAVVDKLEVGTAVLANAQHQHHEHDGRTLEFLDMYGDQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSASSVAKLGVSGSSAVDTVATGDLGDDDVEADVTDEHDESESQLIEEEYVASADPLIEMSGDADGDVDMTEDGMHEDAGDEEEDDELLDVKPHKVQLDMKMLKAKSRQRSPSSKTTKKTMTKQHQQHAAFKKEMKDDINDALELAASAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKSGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVSCRRRDSTPKDELRDKLAKAVHACINDGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDEDEDVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00530367;
- 80% Identity
- iTF_00588941;