Drho006741.1
Basic Information
- Insect
- Drosophila rhopaloa
- Gene Symbol
- -
- Assembly
- GCA_018152115.1
- Location
- JAECXI010000115.1:2624276-2625364[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-18 1.8e-15 56.7 27.6 6 68 73 135 69 136 0.97
Sequence Information
- Coding Sequence
- ATGGACTACAAGCGGGTTGACTCCCCACCGCCCTATTCGGATGACTTGGCCACCGCTCCTCCGGCTGAGATGGATCTGAACCAATACCAGGCGTCGCCGCACCAGCTCTACCCGCAGGTTCCGCAGATAGCCCAGACGACGCCGATGTCACAACCCCCACTTCCGGTGAACGTGGTGCACCAGACCACGGTGTTGGTGGACACTCCGGGACACGGAATGATATGTCCCCATTGCAACGCCCGGATTCGCGTCCGAGTGGAACATCATCGTACGGGAAAGACATACTGCATGGCAGCGATCCTCTGCCTTTTCCTTTGCTGGCCCTGCGTCTGCGTCCCTTGCTGCTGCAACTGCTGCTACAAGACCTCCCAATTCTGCCCCAACTGCAACGCCTGTTTGGGATCGTTTTGA
- Protein Sequence
- MDYKRVDSPPPYSDDLATAPPAEMDLNQYQASPHQLYPQVPQIAQTTPMSQPPLPVNVVHQTTVLVDTPGHGMICPHCNARIRVRVEHHRTGKTYCMAAILCLFLCWPCVCVPCCCNCCYKTSQFCPNCNACLGSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00515923; iTF_00494782; iTF_00529949; iTF_00512394; iTF_00605250; iTF_00486981; iTF_00603021; iTF_00548470; iTF_00578956; iTF_00537179; iTF_00605990; iTF_00581945; iTF_00505783; iTF_00592063; iTF_00565766; iTF_00619513; iTF_00507995;
- 90% Identity
- iTF_00494782;
- 80% Identity
- -