Drho007146.1
Basic Information
- Insect
- Drosophila rhopaloa
- Gene Symbol
- -
- Assembly
- GCA_018152115.1
- Location
- JAECXI010000115.1:12345654-12352341[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00021 0.015 15.6 3.4 1 23 280 302 280 302 0.98 2 10 0.001 0.076 13.4 10.5 1 23 309 331 309 331 0.96 3 10 0.00011 0.0076 16.6 6.5 1 23 337 359 337 359 0.98 4 10 0.00048 0.035 14.5 1.6 1 23 365 387 365 387 0.95 5 10 2.3e-05 0.0017 18.7 0.5 1 23 393 415 393 415 0.97 6 10 1.5e-05 0.0011 19.2 0.1 1 23 421 443 421 443 0.98 7 10 5.8e-05 0.0042 17.4 1.3 1 23 448 471 448 471 0.97 8 10 0.01 0.75 10.3 0.6 1 23 477 500 477 500 0.96 9 10 0.00017 0.013 15.9 0.1 1 23 563 585 563 585 0.98 10 10 0.0046 0.33 11.4 4.9 5 23 742 760 734 760 0.92
Sequence Information
- Coding Sequence
- ATGTGCGCCGCCCAGAATCCGCCGCCCTTCGGCTATACCTGGGGTTTTGCGGACAACGGCAGCCGCGCCACCGAATCGGTACTGGAGATATCGCCCAACATCAACTACACGGTCAGCGGGGAGTCGATGCCCTATCTGTTATCGACGGATGGATCATTGGCCGTTCAAAAGGATGTCAAAGGCCTTACAGCTGGAGGCAAAAATAATGTCGTGCGTCGCATGTTTGTCGTAAACGATCCTTCATTTCCGCCTGGAACACAGAGAGTTATTACTGCCGGAGGAGCATCGACGGTGGTCAAGAAGCAGGACCCCAACCAGCAAGTTCTGAGCCTCGACAAGAACTATCTGCTGGTAGATCCGGCTACGGCCGCAGCAGCTGCAGCCGCTGCTGGTGGGGATCCGGGGCTCGCCCACCACCACACCCTGACCAACGGCAGTATCGTTGATGCTAAGACCGGACAGACGGTGCTAACCGCCGGCTCTGCGGCGGCCAAATCGCACTTCAGCTCGATCGGAGCACTGCATCTCACGCAAGAGGAGTGCAACGAGATCCTGATCAAGCGCGCCATCGCTGCCGGCCACCATCAGACGCACACGATCACCGCTGCCGACGGATCACATCACCATGCGTCCGGCGGGACACCAAGTGACATACTTCCTGGTATTTCAGTTCAAGTACAGAAAGTAATACAAGGGCTGGAGGATAACGAAGACTCGCAGGGCGAAGCACCCAACTTAAAGTTGGAGCCAGGCACATTGGAGTTGTCCCCAAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACGGACGCCACTATCAAGAAGGAACGCCCGTACAGTTGCGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCACCATTTGACAACCCACGCACGCGTGCACACAGGTGGTGAACGCCCCCACATTTGCACCCACTGCGGCAAGAGCTTCGCGCACAAGCACTGTCTCAACACTCACCTGCTGCTCCACTCCACGGAGAGACCTTATCAGTGTCAGGAGTGCAAGAAGAGCTTTACCCTCAAGCACCATCTGCTGACCCACTCGCGGGTCCACAGCCGCGAGCGACCGTTCGTCTGCCAGGAGTGCGGGCGCGCCTTTCCGCTCAAGCGACACCTGGTCACGCATAGCAAGTTTCATGCCGGCGAGCGACCGTATGTTTGTGAGGAATGCGGTGAGAGCTTTGCCCAGGAGAACCACCTGATTATGCACTCGCGCTTCCATGGTTCATTGAATCCATTTGTTTGCGCTGACTGCGGCGCGTCGTTTCCACGCAAGTTTCAATTGGTAAACCACGGACGTATTCACGGCAAAATACCGCACTCTTGCACTGTGTGCGGCAAAGAGTTTCTTCAAAAGCGAACTTTAGTTGCCCACATGAGACGGGTACACACTGGAGAGCAGGCGCATCCTTGCGTCAGCTGCGGCGAGGGATTCCTCACCAAGGCTGAGCTTCATCAGCACGTAAGGACGGCGCACAATGGCGTCAATCCCAACACGAGCAGTGCCACCATCATAGCCAATCAGCAGCAGCTGCAACAGGCCCATCATCATCAGACCGGACACCAGACGCATCCGCAGACCATTACCGTGGTGAGCAATCCGGGTAACTCCACGTTGCTGACTGTCTCCACCACGGATGCCAATGGCGTGGCACGTCCGCAGTTTGTATGCCGGGAGTGCGGCAGCGCCTTTAATAGTCGAGAGGCCTTGGCTCTTCACTTGCGCCTTCACACTGGCGACAAGAGCCTAATGACAGATTTGTGTGCCTTGACAGCCGCGCTGCCGGGACACTTTTTGAGCACGGCCAGCCTGAACCCGGGAACTGTGGTTACGGCCAACCCGAATCTGGTGGGCCAGAGCCCTGTGCCAGTGCAGATCATATCGTCCACCGGTCAGGTGATGTCGCAGACCACGCTGGTGCAGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGTTTCGCCGCCAAGCACGGACTCATGCAGCACAATCGCCGGCACCCGAACGGCGGATGCACAGTTCGTACCCACGTGTGCGAGTGCGGCAAGGCCTTCTTCCAGAAGAACCACCTGATGCTGCACCAGCGCCAGCATTTGGAGACGAAGCCAGCCATATCGCAGCAACAGGAGGCCTCTGCCCAGCAGCAACTGGCGGCTGCCAACGATCAGCAACAGGTGCAGGTCCAGATAATGCCCGATGGCCATGGCAAGGTGATCAAGTACGAGATCTGCCGCAGTGTGTTGCCGGAGGATCAGCATCAGGACCAGGAGGACATGAGCGCGGAGTAA
- Protein Sequence
- MCAAQNPPPFGYTWGFADNGSRATESVLEISPNINYTVSGESMPYLLSTDGSLAVQKDVKGLTAGGKNNVVRRMFVVNDPSFPPGTQRVITAGGASTVVKKQDPNQQVLSLDKNYLLVDPATAAAAAAAAGGDPGLAHHHTLTNGSIVDAKTGQTVLTAGSAAAKSHFSSIGALHLTQEECNEILIKRAIAAGHHQTHTITAADGSHHHASGGTPSDILPGISVQVQKVIQGLEDNEDSQGEAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTERPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCADCGASFPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVAHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRTAHNGVNPNTSSATIIANQQQLQQAHHHQTGHQTHPQTITVVSNPGNSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLVQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQEASAQQQLAAANDQQQVQVQIMPDGHGKVIKYEICRSVLPEDQHQDQEDMSAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00481685;
- 90% Identity
- iTF_00494559;
- 80% Identity
- -