Drel003730.1
Basic Information
- Insect
- Drosophila rellima
- Gene Symbol
- -
- Assembly
- GCA_035043635.1
- Location
- JAWNMV010000145.1:7582760-7587719[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00066 0.046 14.2 0.8 1 23 141 163 141 163 0.98 2 14 0.00014 0.0098 16.3 1.3 1 23 392 414 392 414 0.98 3 14 2.4 1.7e+02 3.0 0.3 1 23 420 443 420 443 0.91 4 14 0.3 21 5.9 1.4 1 23 468 491 468 491 0.92 5 14 0.0012 0.086 13.4 1.9 3 23 767 787 766 787 0.92 6 14 0.05 3.5 8.3 1.4 1 23 793 816 793 816 0.98 7 14 0.34 24 5.7 1.5 2 23 853 874 852 875 0.92 8 14 0.0044 0.3 11.7 0.8 1 23 896 919 896 919 0.97 9 14 0.023 1.6 9.4 0.3 1 20 1130 1149 1130 1153 0.89 10 14 0.0033 0.23 12.0 3.4 1 23 1166 1188 1166 1188 0.98 11 14 0.00018 0.013 16.0 0.4 2 23 1194 1216 1193 1216 0.96 12 14 0.0013 0.091 13.3 3.5 2 23 1248 1272 1247 1272 0.88 13 14 0.52 36 5.1 1.7 1 23 1277 1299 1277 1299 0.96 14 14 0.035 2.4 8.8 1.4 1 23 1305 1328 1305 1328 0.96
Sequence Information
- Coding Sequence
- ATGGCGAGAAATCGAGTGAAAACAGATGACATGGAAGtgaattacaaattttcaTGTCGCTGTTGCCTGAAGTCCGAGGCGGAATTCTTTAAGTTGGACTCCCTAACAGAGACTGTAATAGGCGACAATGATGCGTCCTCTACGAAAATACCACTTATACGCTTACTATTATTCTGTATGCGCACTGAAAACTTACCCGAGCTGCCGCAATACATTTGCGTGGAGTGCAGCAAGAGTTTgcaaattgcatatttttttatccaAAACGGTCTCAGGGCACATGAAATACTGTGTCGCAAATTATGCCCTGGGAAACTGAAAACTACATCGCATTTCAATGGAGAACAACTTTTCGAGGAAAATCGAGATGACGCGACAATCGTCACGCAGAAGGCGAAGCCCCTTAAATCCGCCTCGCGCCATCAGTGCAAAGTATGTGGCGTCATTATCTACAATCGAATGGAACTTAAGCAACACATTCGCATGCACACTGAGAAGTCGAAACATGCGTGCAAGATATGCAAGTTTGTGACGCTTAAACATCGTATGCTACCAGAGCATTATCGAAGAGCCCATGGCTTGACGTCTGCCCAAATTGTTCAGCAACTTAAACTCAGAAGGTCTATCcaggcggctgctgctgcaaccAATGCGACaacttcagcagcagcaacagctgtgaATGACAATGAGGTGAAGGTGTGCACACTGGAGGATATGGAGTTGCTTATACCCACTGTGCTAAGGCCGGAGGACTTTTCGCAGCCACAACTGGATTCAGACCAACTGCGTGATATTGAACAACAATTGGCTAACTCGTTGGCGGTTGACCAGTCTGAGTCAGGTTTAAGCTCCGTTGTCATGCCAACCGAACCAACGATAGCGACGGGTGGCTGTACTAATATGAGCATAGGTGCACAGTTTCTGGTCATGCCAGATGGCTCATTGCAGCAAGTCGATGATGGTGGAGTTGTTTTTGAATACATTGATGACAGCAAGAGACCGACAACGACCACCAATACAACACTGCAGAACTTATTGGATGATTCCAAACCAGACGTGTCTTATAATGCAATGGATATCGATGTGAAGCACTTGGTAACGGATCCGCTGCCACAGATAACTGTGAAACCACCCACAAGACCAGGACCTGCATCAATTGCCGCCCTGAAACACAAATGTAAACTGTGTCCCAAAGCATTTCCCACGGTGGCGCGTCTTAAATCTCATCAGTTAACACACAGTCATTTGCCGAAATTTTATTGCGATCAGTGCTCCTACTACTCGCTGCGTAGCGCTGATCTCATACAACATTACATGGAGGCTCACAGTACTTCCATTGGTGAAAGTAAAAGTCAACTGGAAAAATCATCGCTGTCGACGACAGACAGGAGTCGTACATATTCCTGCGACATGTGCTTATTTGAGACACCGAGCAGTTTCCAGCTACGAAAACACTACAGCGATAAGCATTTGATGCAGCCCAGTGAGGTACAGTTGCGTCCCAGCTGGAACCATGAGTCAAAGGAAAAGGGCGACCAAACGACGCTAGGCAGTGACCAGAATCAACTGAAGAATTCACAACCAGCCATATCGCATATTCCGCTGGGTATTAAATATTCAACAACATCGGCTGTGGCAACAGCTGAATTAAGAGCGACAAATGAATCGAGTGCAACCACAGTAATGcacgcacaacaacaagcacagccaacaacaacagctgtggTAACGTCTACTGGTGACATAAATGTGGTCGTGGATGCAACGACAATGTTCTATGCCGCAACTGCAGCTTCAACAAGTGTagaagcaacaacgacaacaccaGAAACAATTGCAACGGAATCAAACGTATTTCCAATATTTCCAGAGCAATCTTTTggcatgacaacaacaactttgacGGAAGGGGCAAGCGGAATGctgcctgctgttgttgccacaggGAATCCAAGCTGTAGCATCTTTGGTGATATGCAAGATTTCATTGATGACACCGACGTGGCAGCTGTATGCACTATACCCGCCGACGATATGCCAACCGTCGATGGCGATGACATTGTTATTGATAACAATAATATGAGTCTCGATTTCGATGCTGAGAATCTATTTGAAGACTTTGAAGAGGACGTTGAAGTTGGCGAAGATgaggacgaggatgaggaggatgCTGAAAATGATGATGAGAATGACAATAATGATGCGGCTGCCGaccaaaatttgttgctgaccagcgatgacgacgacgtcgacgactTTGATGACGAGCAATCGAAGCATCTGCAGAAGCCATATTGCATCTATTGTAACAAAAAGTTTACCAGCCAATATAAATTCGAGAACCATATGTTCGTACATCGCGGTTTGGCACCGTATCGCTGTGAGCTCTGCACGAATTTGTACAATATGAAGCGTCTGCTTATACGGCACTATAAAACGGTGCACAAGCGAATGCCCACTAGGGATATGGTGCAGGCCAAAGGCGACAAGGTATTAGTGGAGCGTACTGCCATCGAAAAGCTAAATACCAATGTTGAGAAGCCTCCCATGCTGATGTGTGCCAAGTGTCCGTTTGAATGCGAACAGGAAGCTGAGATGCGGAAGCATCTGAATGCGCATCATGGCATCAACGATGGCGTGTCTGTGCATGCAAACGAGGTGTTTATCATTCGCAAATTGCCCTTTGAGTGTCCACGCTGCATTCGCTCATTTGCGGCCAAGCGCACGCTGACTCGTCATTTGCAGCGAAGCCATTTAGTGGACACAATAATTGAGATGCAGGCGCCTCAATTGACAACATGCTCGGCGGCctcaacaaccacaaccacgtTGCCGAAGAATGACAGCGATGGCTGCAGTGACAATAAAGCAACCTTCTTGGATAATTTGAGGCAGCGTGACTTTGACAATGCTGATGGCgatggcaatggaaaatgcGAAGAAAGAGCAATAAACAGTGACACAGGAATAGAAACGGATAATGAAGATATCGACACAaaaccatcaacaacaacggcagctaCACAAAACGATAATGCAAAGGAGACAAATATAAAAGAAGCAGCATCCCCAGAAGTTACAACTTCTACAACAAGGTCTGAATCGTCATCACTGTTAACAACATCAGCACTTGCGGAAACATCAgctaaaacagcaacagcaacagtggaGTCTACACTCTTTGCTACGCCAACCCCTTTTGATTTTGATCTAGATTTCATTGGCAATGGATCAAATCTCGCTTCACTAAAGAACAGAAACGAgaactttaacattttatcaAGCGCCCGTCAACTACTGAATGGAAGCGACAAACTACTGACAGCTGCGTTGGAGCCATCGCCAGTTAAAGACTTACGTTCGAGATTGCCCCGTACTCCCATTTATGTGTGCAAGCAGTGTAACCAAACATTTGACGAGCTGGGCAAACTATTGCAGCACGAAGTGGAGCAACATTCAAACGGGACGGCGGCGCCTCGCAAAAACTATCAACATCAATGCAACATTTGTAGCAGCTCATACCGAACAGTGACACTACTTAATTATCACATGAAAAGACATGCACCGCGAATAGTTCAGTGCAAACAGTGCACCAAAGAGTTTACGTCCAATTCGGAGATGGAGGAGCATGTGGAGACGGAGCATGTGGTGTCGGAACACTTGAAGTCGGAACAATTAGAATCGGAGCACGTAGAGACGGAGCATGTGGTGTCAGAGCAGGACAAAAAAGTGCCCATGACATGCGGAATCGATGGTTGCACTAAGACATTCAATTACAAGCATCATCTGAAGCGCCATCAGACAGCTTCCCATACTCCCGTTCGGTATATATGTTCCCAGTGCGGACGCGATATGTTGACCAGCCTTAACCTAAGGCACCACATGTATAGCCACAAGAGCTCACATTCATACAAGTGTCTCAAATGTGTGCGCACTTATATAAGAGGCAATAGCTTTAAGAGACACGCTCTGCGTGAACATAAATGGAATCCGACTGATAGTGAAATGGCTAAAATATATTGCTTGAATGAAACTCCGTCCTCGGTGCAATACGGGATACGGGAACTAAGATCGTTGAATGCGGATAATGAGCATTCTGATAAGTCATTTGATGCATCAACTggataa
- Protein Sequence
- MARNRVKTDDMEVNYKFSCRCCLKSEAEFFKLDSLTETVIGDNDASSTKIPLIRLLLFCMRTENLPELPQYICVECSKSLQIAYFFIQNGLRAHEILCRKLCPGKLKTTSHFNGEQLFEENRDDATIVTQKAKPLKSASRHQCKVCGVIIYNRMELKQHIRMHTEKSKHACKICKFVTLKHRMLPEHYRRAHGLTSAQIVQQLKLRRSIQAAAAATNATTSAAATAVNDNEVKVCTLEDMELLIPTVLRPEDFSQPQLDSDQLRDIEQQLANSLAVDQSESGLSSVVMPTEPTIATGGCTNMSIGAQFLVMPDGSLQQVDDGGVVFEYIDDSKRPTTTTNTTLQNLLDDSKPDVSYNAMDIDVKHLVTDPLPQITVKPPTRPGPASIAALKHKCKLCPKAFPTVARLKSHQLTHSHLPKFYCDQCSYYSLRSADLIQHYMEAHSTSIGESKSQLEKSSLSTTDRSRTYSCDMCLFETPSSFQLRKHYSDKHLMQPSEVQLRPSWNHESKEKGDQTTLGSDQNQLKNSQPAISHIPLGIKYSTTSAVATAELRATNESSATTVMHAQQQAQPTTTAVVTSTGDINVVVDATTMFYAATAASTSVEATTTTPETIATESNVFPIFPEQSFGMTTTTLTEGASGMLPAVVATGNPSCSIFGDMQDFIDDTDVAAVCTIPADDMPTVDGDDIVIDNNNMSLDFDAENLFEDFEEDVEVGEDEDEDEEDAENDDENDNNDAAADQNLLLTSDDDDVDDFDDEQSKHLQKPYCIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKRMPTRDMVQAKGDKVLVERTAIEKLNTNVEKPPMLMCAKCPFECEQEAEMRKHLNAHHGINDGVSVHANEVFIIRKLPFECPRCIRSFAAKRTLTRHLQRSHLVDTIIEMQAPQLTTCSAASTTTTTLPKNDSDGCSDNKATFLDNLRQRDFDNADGDGNGKCEERAINSDTGIETDNEDIDTKPSTTTAATQNDNAKETNIKEAASPEVTTSTTRSESSSLLTTSALAETSAKTATATVESTLFATPTPFDFDLDFIGNGSNLASLKNRNENFNILSSARQLLNGSDKLLTAALEPSPVKDLRSRLPRTPIYVCKQCNQTFDELGKLLQHEVEQHSNGTAAPRKNYQHQCNICSSSYRTVTLLNYHMKRHAPRIVQCKQCTKEFTSNSEMEEHVETEHVVSEHLKSEQLESEHVETEHVVSEQDKKVPMTCGIDGCTKTFNYKHHLKRHQTASHTPVRYICSQCGRDMLTSLNLRHHMYSHKSSHSYKCLKCVRTYIRGNSFKRHALREHKWNPTDSEMAKIYCLNETPSSVQYGIRELRSLNADNEHSDKSFDASTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00602106;
- 90% Identity
- -
- 80% Identity
- -