Drel002078.1
Basic Information
- Insect
- Drosophila rellima
- Gene Symbol
- grau
- Assembly
- GCA_035043635.1
- Location
- JAWNMV010000143.1:1903080-1905115[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.025 1.7 9.3 1.1 6 23 285 302 285 302 0.98 2 9 5.2e-05 0.0037 17.7 2.9 1 23 308 331 308 331 0.93 3 9 0.00016 0.011 16.2 2.3 1 23 339 361 339 361 0.97 4 9 0.00021 0.015 15.8 0.4 2 23 367 389 366 389 0.96 5 9 0.099 6.9 7.4 0.1 2 23 395 416 394 416 0.95 6 9 2.9 2e+02 2.8 3.9 2 23 425 446 424 446 0.90 7 9 9.8e-05 0.0068 16.8 0.2 2 23 454 476 453 476 0.96 8 9 8.8e-06 0.00061 20.1 0.6 3 23 484 504 483 504 0.99 9 9 0.00063 0.044 14.3 8.5 1 23 510 533 510 533 0.98
Sequence Information
- Coding Sequence
- ATGTTTTGCCGCCTGTGCCTAAACAGCGCCAACGACAccattcaaatatttgagGGCGTTGGGTTGTCCCTAAACGTTGCGACGGTGCTGgccaaatatttttggttccagCCAAAAAACGATGATCCGATATCGACCGACATATGTGTGGGCTGCTGGACACGCGTTAGCGACTTTAACGAGTTCTACTGCAGCGTGGAAAAGGCGCATCGTCTGCTCACCGAACGTTTCTCGCTGAAAGGCggcgagcagcagcaggagaagatTCATCAGAGTGCGACAGACGATGCCGAGGATTCCAAAGAGTTTCTGGACAAGAGCGGGCATGAGAGCGATGGCGACGATGACTTGGATCAGGAAAATGATAATGCTGTCGGGGATTTATATGGCAGCGAGAGCGAAGCAGCCGCATCCTTTGACAACGAGCAGTTTCTCAACGATGTGCTGAGCAATCAAGAAGCGGACGAATCTCTTAGAGATACTGAGCCAGAAACTGTGATTGTCAAGCAGGAAATCGGAATTGCAGCAGTGCAGGAGCGTCGAGAGACACGCGCCACTCGTgccaaaagcaaagcgaaTCAATTGCTCGCTCATGAATCTCCGCCAGCTGAAAAAGCCGCACCCGCCAAGCGCCGGGGCAGATCAATGAATGCGAAACGCGACGCCAGTGTCGAGAATGGAGCGAAGAACAAACGCTACGTGGATTATAAAAAGTCCATGTGGGAGATTGATAAGAAGATAGCGCAACACATGCGACTCACCTGCAGCATTTGCCACGAGGGTCAGGAGACGTTTCTGTTGCTCTGCAAGCACatgcagcagctgcatcaTCGCAAGGGCTACGCCGTCTGTTGCAACAAGAAGTTCTACAAGCGATCCTTTCTCACCGATCACATCGATCGTCACACGAATCCCGAGAAATTTAAATGCAATCTCTGTGGCAGAACCTTTGCGGATAAGCAGTGTCTGCGCAACCATGAGCTGCTCAAGCATCAGCCCGACGAGGAGAAGACTTTCATGTGCGAGCACTGTCCGAAGCGATACACCAAGCAGTATTTATTGGATCAGCACAGGATTATACACAAGGAACGCAATGTGCCCTGCGATCTGTGCGACAGGCGGTTCCCCAACGTTTCCATGCTCTGTACGCATGTGAAAATGGTGCACGGCAATTATGGCACCATGTGCGACATTTGTGCCCAGGTGATAAGAGGTCAGGCGGCCTTTCAGCGCCATCAGCTGGAGCACGCTGGCATCACGGAGCCCAAGGTGCAGTGCGACATATGCGGATCGTGGCACAAGAACAAATACAGCTTGAAGAAGCATGTGAGCCGGCACAATGGCTCCTCGGAGGAGAGCACCTGCAACATCTGTGGCAAGGTGTCGCCCAATCGCAGCGCCATGTTAAGTCATCAGCGTTATGTGCACACGGCGGATCGTGTCCATGGCTGCAGTGTGTGCAACAAGAAGTTCAAAAAGGCCATCAATCTGAAGGAGCACATGGCCACGCATACGGGCGAAGTGTTGTACAAGTGCCCGCATTGTCCCAAGACCTTCAACTCGAATGCCAATCAGCATTCGCATCGGAAGAAGTGTCATCCCAAAGAGTTTGAAGAGGCGCGCAAGGCGCGTCTACAGAATCGCATGGCGCCCACCGCAGGTGAAAGCAAAGCCAAGGCCAGCATGATTACGATAACCACGTCCGGAGAGACCGATGGGGAAATGGAAACGCACAACATTCTGGTAACGACGGCGGAGCAAAGCGATGAGGAGGAATTCAAAGGCGAGGACATTGAGTTTATGCTCACACTCAGTCCACAGCCGACGGAATAG
- Protein Sequence
- MFCRLCLNSANDTIQIFEGVGLSLNVATVLAKYFWFQPKNDDPISTDICVGCWTRVSDFNEFYCSVEKAHRLLTERFSLKGGEQQQEKIHQSATDDAEDSKEFLDKSGHESDGDDDLDQENDNAVGDLYGSESEAAASFDNEQFLNDVLSNQEADESLRDTEPETVIVKQEIGIAAVQERRETRATRAKSKANQLLAHESPPAEKAAPAKRRGRSMNAKRDASVENGAKNKRYVDYKKSMWEIDKKIAQHMRLTCSICHEGQETFLLLCKHMQQLHHRKGYAVCCNKKFYKRSFLTDHIDRHTNPEKFKCNLCGRTFADKQCLRNHELLKHQPDEEKTFMCEHCPKRYTKQYLLDQHRIIHKERNVPCDLCDRRFPNVSMLCTHVKMVHGNYGTMCDICAQVIRGQAAFQRHQLEHAGITEPKVQCDICGSWHKNKYSLKKHVSRHNGSSEESTCNICGKVSPNRSAMLSHQRYVHTADRVHGCSVCNKKFKKAINLKEHMATHTGEVLYKCPHCPKTFNSNANQHSHRKKCHPKEFEEARKARLQNRMAPTAGESKAKASMITITTSGETDGEMETHNILVTTAEQSDEEEFKGEDIEFMLTLSPQPTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00602095;
- 90% Identity
- iTF_00534083; iTF_00602095; iTF_00523194; iTF_00507126;
- 80% Identity
- -