Basic Information

Insect: Drosophila rellima
Gene Symbol: -
Assembly: GCA_035043635.1
Location: JAWNMV010000143.1:315108-318825[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.7 1.9e+02 2.9 0.0 1 23 373 398 373 398 0.89

2 16 0.019 1.3 9.6 1.8 2 23 409 430 409 430 0.93

3 16 5.8 4.1e+02 1.8 3.0 2 17 441 456 440 467 0.75

4 16 0.045 3.1 8.5 0.2 3 23 500 520 498 520 0.96

5 16 0.00045 0.031 14.8 0.2 1 23 528 551 528 551 0.96

6 16 8.3e-05 0.0058 17.1 0.4 2 23 556 577 555 577 0.97

7 16 0.00063 0.044 14.3 1.1 1 22 625 646 625 649 0.90

8 16 0.22 16 6.3 0.7 3 21 656 674 656 675 0.90

9 16 0.052 3.6 8.3 1.3 1 23 694 719 694 719 0.95

10 16 0.012 0.85 10.3 1.4 2 23 734 756 733 756 0.93

11 16 0.0027 0.19 12.3 0.1 3 23 763 784 761 784 0.92

12 16 0.2 14 6.4 0.6 2 23 788 810 787 810 0.96

13 16 0.00018 0.012 16.0 1.8 1 23 816 838 816 838 0.97

14 16 0.036 2.5 8.8 0.7 1 23 842 865 842 865 0.93

15 16 1e-05 0.00069 20.0 2.3 1 23 871 894 871 894 0.97

16 16 0.0033 0.23 12.0 0.2 5 23 907 926 899 926 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.7	1.9e+02	2.9	0.0	1	23	373	398	373	398	0.89
2	16	0.019	1.3	9.6	1.8	2	23	409	430	409	430	0.93
3	16	5.8	4.1e+02	1.8	3.0	2	17	441	456	440	467	0.75
4	16	0.045	3.1	8.5	0.2	3	23	500	520	498	520	0.96
5	16	0.00045	0.031	14.8	0.2	1	23	528	551	528	551	0.96
6	16	8.3e-05	0.0058	17.1	0.4	2	23	556	577	555	577	0.97
7	16	0.00063	0.044	14.3	1.1	1	22	625	646	625	649	0.90
8	16	0.22	16	6.3	0.7	3	21	656	674	656	675	0.90
9	16	0.052	3.6	8.3	1.3	1	23	694	719	694	719	0.95
10	16	0.012	0.85	10.3	1.4	2	23	734	756	733	756	0.93
11	16	0.0027	0.19	12.3	0.1	3	23	763	784	761	784	0.92
12	16	0.2	14	6.4	0.6	2	23	788	810	787	810	0.96
13	16	0.00018	0.012	16.0	1.8	1	23	816	838	816	838	0.97
14	16	0.036	2.5	8.8	0.7	1	23	842	865	842	865	0.93
15	16	1e-05	0.00069	20.0	2.3	1	23	871	894	871	894	0.97
16	16	0.0033	0.23	12.0	0.2	5	23	907	926	899	926	0.90

Sequence Information

Coding Sequence: atgtcggaaaattcgaaaacaaataacaaagttGAGCCTAGCTGCCTGCATTGCAGAGTGCACAATTCAAAGCAGCCATTTCAGGAGATATTCGATGAAGTGGGAATTGAAATCGAACTGCCCGATCTGCTAGCCAAATATTTTCAGATAAATATCAAACCCGATCCCcaaaaacagcaactgctGTGTCAAGAGTGCGTTAAAACATTAATCCGTTTCTTCGACATCGATGAACTGCAGCGGGAACAGGATGCGGCCAAGAGTAAACCCAATAAGCaagccaaaaatgaaaaaactcCATCAGCTGCTGTTAAAAGGGAAACGAGGCCCAGTAAAAAACAAACGCCTCCAAcgaacaaaaccaaaaatgaaCCTAAAAAGTTGTCAGCTTCTGAAAAGCTGCCAACTCCAGAAGGTGCTCCTCCATCAAAAGTTTCTCCTGCAGCGGAACCAGTTTCCATGCGCATAACCAGAGGAAAATCAGCGACTGTGGCACAAAAACCTGCCCAGATCAATGCCAAGTCCAAACCAAGTGAGAAGTCCAGTGGGAAGCAGGAAGGTAAACGGCACATCGCCAAGGAAGCAAAAACAGGGGAACAGGAGCAGATTAGCGAGCTCTTACGTGACATACTGGATGATGAGAAGACGCCACCCGATGGCAAATCTAACGAGAGAGCGACAAGAGTGCGTCAGACGGAGACAAAAGTCGCTGTCGAGGAGAAACACGTGGAAAGGGAACGGGAAGAAGGGGAGGAGAAAGAGACGGACAAGCAGCAGGAAAATGCTGATGAGCTCGAGTTTCTGCTCGAGTCTGAAGATGGTTCCTCTGATTTGGACGTGCGTCACTTCAAGGTGGAGAAGCGCACATCAATTGACACCGCGCAATCGCAAAGCGAGGATGAATCCCTCAAAGTGGAGCCTTTCAACTTTGTATTAATCAAGGAATCTGATGACATTGAAGATCTGTATGAATACTTGTCAACTGTGGTGAAGACTTGCTTTGAGACCTTGTCCTTTGAATGGTCCACCGTGTGTTGTCACTGCTCGCTGAAGTGCAGCAAATTTGAGACTTTGTTGGCGCACACGCAAAAGTGCCACCAGCTGCCAGAGGAGCGCTTCAAGTGCCCCATTGAGGACTGCAACGCCGAGTTGCCCAGCTACAAATTCTTGGCCATGCATTTAGTTCTTCTGCATGCGCCTGTGGCAGACATACCCATTTATGGCAGCTGCCCGGAGTGCAACATGACCTTCTCCAACATATTGCAGTACAATAAACACTCTTGCGCCCATGTCATCAAGAAGCGTCGTGGCATGCGCCTATATTGCGAAATGTGCGGCTTGGAGTTCCCCTCCTGGAAGCGCTTTAACTTTCACAATCAATTCCATTTGGAGAGACACAGACCACGTGCCTGTTTTGTGTGCAATTATGCGGACACCAACATCGATGAACTGTTCCAGCATTTGCATTATTCACACGAACCCGAAGGCACGCTCTTCTGTGACATCTGTGACCGCTATTTTCGAGAGCCTGCTGTGTTTGCGGATCACAATAAAACTCATACGAATGCCAACAACATCACATTCATCTGCACCGTTTGTAATGCCAGCTTTGAGACACGGGGACGTCTTAGTAACCACATACGCGCCACGCATGGATCCATCATTAGCTGTGAGCTGTGCGGTCGAGAGTTTGCCACGGAGACTTCGTACAACATGCACATGAAGAAGCATCTGATCATTGAGCGTGAGGTGCATGTGTGCAGCAATTGTGGCATCCTCAACGAGAATCAGGACAAGATGATGACTCACGTCGAGACTGTGGATTCCGCTTGTTTGGGCGTTGAAGTCTATGTGGAACTTTTAAGGGATGCCTATGTTTGTGAATATTGCTCAGCTTACTTTAAGCATAAAACAGACCTGCGTGCTCATCGCGATTCGGGCATACATAAGGATGGCTTTTGTTGGTGTCAGCCGTGTGGCAAGGAGTTTAACGACATGAAAGTCTATCGTCATCATATGCGTAACTTTCAGCAACAACGGGCGGATGTTGATCATCGCAAGCTGGAGATTTGTCTTTACTTTATGTGCGACTATGAAAATTGCTTTGAGTCGTACATCAATTGGAATTCATTGTACACTCACAAGAAACGCACTCACAATGTGGTGGATAAGGAGATGACGACAAAGGTCAATGAATGGATCTGCCAGTTCTGTCAGAAGGTTTGTCGCTCCAAAATGTCGCTATCGGTGCATGTGGCACGCAGTCACAACAACAATAATGTCATTTGTCCGATCTGCAATGCTTCATATAAGGATGACGAGGCGTTGAAGAAACATCACGCCTATTGGCATGAGCCCATGAAGTGTGCGCTGTGCCTGAAATTAGTCAAGAATCGTCGCAACTTTGACACACACATGAATGTGGTGCACTCGAATAATAAGCGTTATGCCTGCAGTGTCTGCAAGAAGGGATTCTATCACAGGAGCGAAATGGAGGCACATAAGCGGTTGCATTCGCAATTGTTTAGCTGCGGACAGTGCAGCTTCACAACGAGGAACAAGCAATCATTGTCGGTTCATGTGCTTGGCCAGCATTACAAGAGTTTCGCCTTTGAGTGTACTATCTGCAATAAGCATTTCGGACGTCGTCAGGGTTTAACCAATCATATGCAACGTGTCCATGGCTCCAAGAATACGTGTCGTGATTACTTTGAAGGTGGCTGCAGCAAAACCTTTAACACAATCGCACAGTTGAACGTGCACGTGCGTAAAGCACATGATGGCAACATTGTGCTAGCAGATCCGGACGAGGATGAGCAGGAGGAGGATCAGGATGATGAGCAGCAGGATCACGAAGAAAACGAGGAGCACGATGAGCAGGctgaggaggagcaggagcaacagcCGAACCAAAAACCGATGCTTAACGTTTCAACAGCTCCATCTACATCGAAGAAACGTTGCATACGAATCAGCGACACACACATCGAGTTCATAAGCGCCGATCCCGAAGAGGATAACATGAGCATTACGGACGCGAAGAACCTTGAGGAACTCCAAGAAACCAAACACAAACCGCCGCCagcaaagagaaagaaaaaacagagttaa
Protein Sequence: MSENSKTNNKVEPSCLHCRVHNSKQPFQEIFDEVGIEIELPDLLAKYFQINIKPDPQKQQLLCQECVKTLIRFFDIDELQREQDAAKSKPNKQAKNEKTPSAAVKRETRPSKKQTPPTNKTKNEPKKLSASEKLPTPEGAPPSKVSPAAEPVSMRITRGKSATVAQKPAQINAKSKPSEKSSGKQEGKRHIAKEAKTGEQEQISELLRDILDDEKTPPDGKSNERATRVRQTETKVAVEEKHVEREREEGEEKETDKQQENADELEFLLESEDGSSDLDVRHFKVEKRTSIDTAQSQSEDESLKVEPFNFVLIKESDDIEDLYEYLSTVVKTCFETLSFEWSTVCCHCSLKCSKFETLLAHTQKCHQLPEERFKCPIEDCNAELPSYKFLAMHLVLLHAPVADIPIYGSCPECNMTFSNILQYNKHSCAHVIKKRRGMRLYCEMCGLEFPSWKRFNFHNQFHLERHRPRACFVCNYADTNIDELFQHLHYSHEPEGTLFCDICDRYFREPAVFADHNKTHTNANNITFICTVCNASFETRGRLSNHIRATHGSIISCELCGREFATETSYNMHMKKHLIIEREVHVCSNCGILNENQDKMMTHVETVDSACLGVEVYVELLRDAYVCEYCSAYFKHKTDLRAHRDSGIHKDGFCWCQPCGKEFNDMKVYRHHMRNFQQQRADVDHRKLEICLYFMCDYENCFESYINWNSLYTHKKRTHNVVDKEMTTKVNEWICQFCQKVCRSKMSLSVHVARSHNNNNVICPICNASYKDDEALKKHHAYWHEPMKCALCLKLVKNRRNFDTHMNVVHSNNKRYACSVCKKGFYHRSEMEAHKRLHSQLFSCGQCSFTTRNKQSLSVHVLGQHYKSFAFECTICNKHFGRRQGLTNHMQRVHGSKNTCRDYFEGGCSKTFNTIAQLNVHVRKAHDGNIVLADPDEDEQEEDQDDEQQDHEENEEHDEQAEEEQEQQPNQKPMLNVSTAPSTSKKRCIRISDTHIEFISADPEEDNMSITDAKNLEELQETKHKPPPAKRKKKQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00534097;
90% Identity: -
80% Identity: -