Basic Information

Insect: Drosophila rellima
Gene Symbol: -
Assembly: GCA_035043635.1
Location: JAWNMV010000890.1:8221297-8228637[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.4e-05 0.0017 18.7 2.1 1 23 264 286 264 286 0.97

2 18 8e-06 0.00056 20.3 0.4 1 23 292 314 292 314 0.97

3 18 0.0012 0.082 13.4 0.9 1 23 320 342 320 342 0.95

4 18 1.7e-05 0.0012 19.2 3.1 1 23 348 370 348 370 0.97

5 18 3.9e-05 0.0027 18.1 4.7 1 23 376 398 376 398 0.99

6 18 7.1e-05 0.0049 17.3 5.7 1 23 404 426 404 426 0.97

7 18 3.5e-07 2.4e-05 24.6 4.3 1 23 432 454 432 454 0.98

8 18 1.2e-07 8.6e-06 26.0 2.4 1 23 460 482 460 482 0.97

9 18 7.2e-05 0.005 17.3 6.7 1 23 489 511 489 511 0.97

10 18 0.00013 0.0088 16.5 6.5 1 23 517 539 517 539 0.98

11 18 1.1e-05 0.00078 19.8 4.5 1 23 545 567 545 567 0.98

12 18 8.1e-06 0.00057 20.2 8.1 1 23 573 595 573 595 0.98

13 18 6.6e-06 0.00046 20.5 7.6 1 23 601 623 601 623 0.97

14 18 7.4e-07 5.2e-05 23.5 7.7 1 23 629 651 629 651 0.98

15 18 0.00023 0.016 15.7 9.5 1 23 657 680 657 680 0.95

16 18 8.2e-05 0.0057 17.1 0.9 1 23 686 708 686 708 0.98

17 18 0.0009 0.063 13.8 3.4 1 23 718 740 718 740 0.97

18 18 1e-05 0.00071 19.9 1.6 1 23 746 769 746 769 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.4e-05	0.0017	18.7	2.1	1	23	264	286	264	286	0.97
2	18	8e-06	0.00056	20.3	0.4	1	23	292	314	292	314	0.97
3	18	0.0012	0.082	13.4	0.9	1	23	320	342	320	342	0.95
4	18	1.7e-05	0.0012	19.2	3.1	1	23	348	370	348	370	0.97
5	18	3.9e-05	0.0027	18.1	4.7	1	23	376	398	376	398	0.99
6	18	7.1e-05	0.0049	17.3	5.7	1	23	404	426	404	426	0.97
7	18	3.5e-07	2.4e-05	24.6	4.3	1	23	432	454	432	454	0.98
8	18	1.2e-07	8.6e-06	26.0	2.4	1	23	460	482	460	482	0.97
9	18	7.2e-05	0.005	17.3	6.7	1	23	489	511	489	511	0.97
10	18	0.00013	0.0088	16.5	6.5	1	23	517	539	517	539	0.98
11	18	1.1e-05	0.00078	19.8	4.5	1	23	545	567	545	567	0.98
12	18	8.1e-06	0.00057	20.2	8.1	1	23	573	595	573	595	0.98
13	18	6.6e-06	0.00046	20.5	7.6	1	23	601	623	601	623	0.97
14	18	7.4e-07	5.2e-05	23.5	7.7	1	23	629	651	629	651	0.98
15	18	0.00023	0.016	15.7	9.5	1	23	657	680	657	680	0.95
16	18	8.2e-05	0.0057	17.1	0.9	1	23	686	708	686	708	0.98
17	18	0.0009	0.063	13.8	3.4	1	23	718	740	718	740	0.97
18	18	1e-05	0.00071	19.9	1.6	1	23	746	769	746	769	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTTTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACGTTAGGCGGACCGCCGTCATTATCGAATAAGGTTGATCATAAAGAGGATAGCGGCAAGCAGCCGCCACACGGCATTGAAATGTATAAAGTGAACATTGAGGATATATCGCAACTATTTACGTATCACGAGGTCTTTGGCAAAATCCATGGCGATGTGGTTAATCATGTGGCGGCGGTGCATGGCAGTCAGTTGCCACCGCCACAactgccaccgccaccgccactgCCACCGCAGACGACGCATTCGGCAAGCGCAGCTGCAGCCGCAGCGGCGGCGTCCACAAATAATGCAGCCGTCGCTGCTGTAATGGCCTCGGccaatgcagcagcagcggctgcaGCAGCCGCATCAGCAGCGGTATCAgctcaacatcaacaacagcaacaacaacagcaacaacagcaacaacaacagcaacaacaacaacagcaatcagtGACAAGCACAAATGCTGGAAGCCAGCAGGGCAGCGCCACGGTGACCACGACTAGCTCAGGTAGCAACGGGAACAATAATAATGGGGGTAACAATGggggtaacaacaacaacaacaacagcaacaacaataacagtaataacaataacaattcgacaacgacgacggGTGAGTTGCTAATGCCAAAAATGGAGGGCGGCATTCATGGCGTCGATGGTCAGTCGAGCGTTTCGTTGGCGCCGGATGGCACGCCCATAGCGACTGGTACGCATGTTTGCGATATTTGTGGCAAGATGTTCCAATTTCGTTATCAGCTGATTGTGCACCGTCGCTACCACAGCGAGCGCAAGCCGTTTATGTGTCAGGTGTGCGGTCAGGGCTTTACCACATCGCAGGATTTGACCCGTCATGGCAAAATCCATATTGGCGGTCCCATGTTCACATGCATTGTTTGCTTCAATGTGTTTGCCAATAATACAAGTTTGGAGAGACATATGAAAAGGCATTCGACGGACAAACCATTCGCCTGCACCATTTGCCAAAAGACTTTCGCACGCAAAGAGCATCTGGACAATCATTTTCGTTCGCATACCGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACACGCAAGGAGCATCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAGATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTCACACGCAAGGAGCATTTGTTAAATCACGTGCGCCAGCACACGGGAGAGTCGCCGCATCGTTGCAGCTACTGCATGAAGACGTTCACGCGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGTACATACTGCACGAAGACGTTTACCCGTAAGGAGCATCTAACGAATCATGTCCGTCAGCATACGGGCGATTCGCCGCATCGTTGCAGCTACTGCAAGAAGACGTTCACCCGGAAGGAGCATCTGACGAATCATGTCCGCCTGCACACTGGAGATTCGCCCCATAAGTGCGAATATTGCCAGAAGACGTTCACGCGCAAGGAGCATCTCAATAATCATATGCGCCAGCATTCTAGCGACAATCCCCATTGCTGCAACGTTTGCAACAAGCCCTTCACCCGCAAGGAGCATCTGATCAATCACATGTCGCGCTGTCACACCGGCGATCGCCCCTTCACCTGCGAGACGTGCGGCAAATCGTTCCCCCTCAAGGGCAATCTACTGTTCCATCAGCGCAGCCATACCAAGGGCCAGGAGTGCGAACGTCCGTTTGCCTGCGAGAAGTGCCCCAAGAATTTCATATGCAAAGGTCACTTGGTCTCGCACATGCGCTCGCATTCGGGCGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCGTTCGTCGAGCGCGGCAATTTGAAGCGGCACATGAAGATGAACCATCCGGATGCCATGATGCCACCACCACCCgtgcatccgcatccgcaaaTACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCATCACTCGGCAACGACCACAATGCACACCATACAACAGATAACAGCTGGAGCGGCTGCAGCTGGCGCCGGTGCCGTCCAGTTGACGCCGGGCTTGGTGCCGCTGGTCACGAGCTCGCTCATCTCGCACAATGCCCAGCAATcgcagaagcaacagcaggcggcggcagcagtTGCTGCCCAACAgcaggcggcggcagcggccgCGGCACAGCAacaggcggcggcagcagctgcggcaCAGCAACaggcagcggcagtggcacatcagcagcatcagcaacaggttgctgcacagcagcaacaacagcaacagcaggcggcggtggcagcacatcagcagcagcaacaacagttgcagcagcaacaattgctgcaGCTATCGATACAGCAGGCggcgcatcatcatcagcaacatcagcagcagcaacaacagcagcagcagcatcatcagcagcaacagcaacaggccCATCCGCAGGCaccgccacagcagcaacaacagcaacagccaccgCCGCAGGTGCCCATTGCCTTGATAAGTGATCCAAGTGCATTGGCACGGGCTGCcatgcagctgcagcatctGCCCAGCAATGTTGAGCAACATCCGGTTGTTTACTAA
Protein Sequence: MQHVSAASSAPSVVSAPVVTTGGGTTITLGGPPSLSNKVDHKEDSGKQPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQTTHSASAAAAAAAASTNNAAVAAVMASANAAAAAAAAASAAVSAQHQQQQQQQQQQQQQQQQQQQQSVTSTNAGSQQGSATVTTTSSGSNGNNNNGGNNGGNNNNNNSNNNNSNNNNNSTTTTGELLMPKMEGGIHGVDGQSSVSLAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLTPGLVPLVTSSLISHNAQQSQKQQQAAAAVAAQQQAAAAAAAQQQAAAAAAAQQQAAAVAHQQHQQQVAAQQQQQQQQAAVAAHQQQQQQLQQQQLLQLSIQQAAHHHQQHQQQQQQQQQHHQQQQQQAHPQAPPQQQQQQQPPPQVPIALISDPSALARAAMQLQHLPSNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560429;
90% Identity: iTF_00560429;
80% Identity: -