Dqui017421.1
Basic Information
- Insect
- Drosophila quinaria
- Gene Symbol
- -
- Assembly
- GCA_035047525.1
- Location
- JAWNPO010000471.1:10639360-10644870[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0083 0.66 10.9 1.0 1 23 142 164 142 164 0.97 2 14 0.00015 0.012 16.4 1.3 1 23 398 420 398 420 0.98 3 14 2.9 2.3e+02 2.9 0.5 1 23 426 449 426 449 0.91 4 14 0.92 73 4.5 0.5 1 20 474 493 474 497 0.90 5 14 0.0014 0.11 13.4 1.9 3 23 768 788 767 788 0.92 6 14 0.054 4.3 8.3 1.4 1 23 794 817 794 817 0.98 7 14 0.37 30 5.7 1.5 2 23 854 875 853 876 0.92 8 14 0.0048 0.38 11.7 0.8 1 23 897 920 897 920 0.97 9 14 0.022 1.8 9.6 0.9 1 23 1134 1156 1134 1157 0.91 10 14 0.0037 0.29 12.0 3.4 1 23 1170 1192 1170 1192 0.98 11 14 0.00067 0.053 14.3 0.2 2 23 1198 1220 1197 1220 0.92 12 14 0.0017 0.14 13.1 3.1 3 23 1248 1271 1247 1271 0.86 13 14 0.93 74 4.5 2.0 1 23 1276 1298 1276 1298 0.96 14 14 0.0032 0.25 12.2 1.0 1 23 1304 1327 1304 1327 0.96
Sequence Information
- Coding Sequence
- ATGGCGAGAAAGCGAGTGAAAACAGATGACATGGAAGTGAATTACAAATTTTCATGTCGCTGTTGCCTGAAGTCCGAGGCGGAATTCTTCAAGTTGGACTCCCTGACAGAGACTGTAATAGGCGACAATGATGAGTGCTCAACTAAAATACCCCTTATACGTTTACTACTATTCTGTATGCGCACTGAAAACCTGCCCGAGCTGCCGCAATACATATGCGTGGAGTGCAGCAAGAGCTTGCAAATCGCATACATTTTCATCCAAAACGGTCTCAGGGCACATGAAATACTGTGTCGCAAACTATGCCCTGGAAAACTGAAAGCAACTCAGCGTTTCaatggacaacaacaactcgtcGAGGATAACCGAGATGACGGGACAATCGTCACGCTGAAGGCGAAGCCTCCTAAATCCGCAGTGCGCCACGAATGCAAAGTATGTGGCGCCATTATCTATAATAGAGTGGAACTCAAGCAACACATTCACATGCACACAGAGGAATCGAAACATGAGTGCAAGTTGTGCAAGTTTGTGACGCTTAAACAGGGTCTGCTACCAGAACATTATCGAAGAGTTCACGGCTTGACGGCTGCCCAAATTGATCAGCAACTTAAACTCAGAAGATCTGTGGAggcggcagctgctgcaacCAATGCGACGACttcagcagccgcagcagcagcagccacaactaTTGTGAATGATAATCAGGTGAAGGTGTGCACACTGGAGGACATGGAGCTGCTGATACCCACTGTTCTAAGGCCGGAAGACTTTTCGCAACCACAACTGGATTCAGATCAACTGCGTGATATTGAATTACAATTGTCAAACTCCTTGCCTGTTGACCAATCTGACTCAGGCTTAAGCTCCGTTGTCATGCCAACCGAACCAACGATAGCGTCTGGTGAAAGTGGTAATGTGAGCATAGGGGCACAGTTTCTGGTCATGCCAGATGGCTCGTTGCAGCAAGTCGATGATGGTGGAGTTGTTTTCGAGTACATCGATGACAGCAAGAGACAGACAACGAGCACCAATACAACACTGCAGAACTTATTGGATGACTCCAAGCCAGACGTGTCTTATAATGCAATGGATATTGATGTAAACCACTTGGTGACAGATCCGCTGCCACAGATAACAGTGAAACCACCCACAAGACCCGGTCCAGCCGCAGTTGCCGCCCTGAAACACAAATGTAAACTGTGTCCCAAAGCATTTCCCACGGTGGCGCGTCTTAAATCTCATCAGTTAACACACAGTCATTTGCCGAAGTTCTATTGTGATCAGTGCTCCTATTACTCGCTCCGCAGCGCTGATCTCATCCAACATTACATGGAGGATCACAATACATCTATTGGGGAAAGTAAAAGTCAACTCGAAAAATCATCGCTGTCGACGACAGACAGGAGTCGTTCATATTCCTGCGACTTGTGCTTATTTGACACACCGAGCAGTGTTCAGCTTCGAAAGCACTACGGCGATAAGCATCTGATGCAGCCCAGTGAGGTACAGTTGCGTCCCAGCTGGAACGATGAGTCCAAGGAGAAGGGCAGTGACCAGAATCAGCTGAGGAATTCTCAACCAGCCGTATCACATATTCCGCTGGGTATTAAATATTCAACAGCTTCAGAATTGAGAGTGACAAGCGAGTCGAGTGCAACGTCAGCAATGCATCTTCCACAGCAACAGgcacagccaacaacaacatctgtGGTATCGCCTACTGGTGAAATAAATGTGGTCGTGGATGCAACCACAATGTTCTATGCAGCAACTGCGGCTGCAACCAGTGTAGaagcaacagcgacaacgacaacaacatcaacaattgCAACGGAATCCAACGAATACGCAATATTTCCAGAGCAATCTTTTGCCAACAGcatgacgacaacaacaactttgacAAGAGAGGCAGTTAACTCTACTGCGGTTGCTCCCCCAGGAAATCCAAACTGTAGCATCTTTGGTGATATGCAAGATTTCATTGATGACACCGATGTGGCAGCTGTATGCACCATTCCCGCCGACGATATGCCTGTCGTCGATGGCGATGACATTGTTATTGATAACAATAATATGAGTCTCGATTTTGATGCTGAGAATCTATTCGAAGACTTTGAAGAGGACGTTGAAGTTGGCGAAGTTGATGACGAGGATGACGAGGAGGATGCTGAGAATGATGATGAGAATGACAATAATGATGCGGCTGCCGATCAAAATTTGTTGCTTACCAGCGATGATGACGACGTCGATGACTTTGATGACGAACAATCGAAGCATCTGCAGAAGCCATATTGCATCTATTGTAACAAGAAGTTTACCAGCCAATACAAATTCGAGAACCATATGTTTGTGCATCGCGGTTTGGCGCCGTATCGCTGTGAGCTCTGCACGAATCTGTACAATATGAAGCGTTTGCTAATACGACACTACAAAACGGTGCACAAGCGAATGCCCACTAGGGACATGGTGCAGGCCAAGGGCGACAAGATTTTAGTGGAACGTACTGCCATCGAGAAGCTGAATACCAATATTGAGAAGCCTCCCATGCTGATGTGTGCCAAGTGTCCGTTCGAATGCGAGCAGGAGGCTGAGATGCGGAAGCATCTGAATGCGCATCATGGCATCAACGATGGCGTCTCTGCACATGCAAACGAGGTGTTTATCATTCGCAAATTGCCTTTTGAGTGTCCACGCTGCATTCGCTCATTTGCTGCCAAGCGCACGCTGACTCGCCACTTGCAACGGAGCCATTTAGTGGACACAATCATTGAGATGCAGGCGCCTCAATTAACAACTAGTtcggcggcaacaacaaccacatcgACGGCAACAACCACATTGCCAAAGAATGACAGCGATGGCTGTGTGGACAATAAAGCAACCTTCATGGATAATTTGAGGCAGCGTGACTTTGGCAATGCTGATGGCGATGGCAATGGAAAATGCGAAGACAGAGCGATAAACAGTGACACAGGAATAGAAACGGATATTGAAGATATAGACACAAaaccatcaacaacaacaaggtcaggaatagaaacaacaacggcagctaAGGCAAACGATAATGTAAAGCAGACAAATACAGAAGATTTTACAACGTCAACAGCAAGGTCGGAACCATCGACACCGTTGGCAACATTGGCAATAGCAGAAACATCAGCtaaaacaccaacaacaacagtgaacTCTACGCTGTTTACGACGCCAACATGTTTTGATTTCGACCTGGATTTCATTGGCAATGGATCACTAAAGAGCAGCAACGAAAGCTTTAACATTATATCAAGCAGCCGTCAACTGTTGAACGGAAGTGACAAACTACTGACAGCTGCGTTGGAGCCATCGCCAGTTAAAGACTTGCGTCCGAAATTGCCCCGCACTCCCATTTATGTGTGCAAGCAGTGTAACCAAACATTTGACGAGCTGGGCAAACTGTTGCAGCACGAAGTGGAGCACCATTCAAACGGGACTGCGTCGATGCGCAGAAACTATCAACATCAATGCAACATTTGTAGCAGCTCATATCGAACAGTGACACTACTTAACTATCACATGAAAAGACATGCACCGCGAAAAGTTCAGTGCACACAGTGCACCAAAGAGTTTACGACCAATTCGGAAATGGAGGAGCACGTGGAGTTGGAGCATGTGGTTTCGGAATACGTGAAATCGGAGCATGTACAATCGGAGCACGTAGAGACGGAGCAGGGCCATAAAGTGCCCATGATATGCGGAATTGATGGTTGCACTAAGACATTCAATTACAAGCATCATCTGAAACGCCATCAGACAGCTTCACATACTCCCGTTCGCTATGTATGTCGCCAGTGCGGACGGGATATGTTGACTAGTCTCAACCTAAGACATCACATGTACAGCCACAAGAGCTCACATTCATACAAGTGTCCCAAATGTGTGCGCACTTATATAAGAGGCAACAGCTTTAAAAGACACGCTCTGCGTGAACACAAATGGAATCCGACTGATggtgaaatggccaaaatatATTGCTTGAATGAAACTCCGCCCTCGATGCAATATGGGATACGGGAACTTAGATCAGTTAATGCGGATAATGAGCATTCGGATTAg
- Protein Sequence
- MARKRVKTDDMEVNYKFSCRCCLKSEAEFFKLDSLTETVIGDNDECSTKIPLIRLLLFCMRTENLPELPQYICVECSKSLQIAYIFIQNGLRAHEILCRKLCPGKLKATQRFNGQQQLVEDNRDDGTIVTLKAKPPKSAVRHECKVCGAIIYNRVELKQHIHMHTEESKHECKLCKFVTLKQGLLPEHYRRVHGLTAAQIDQQLKLRRSVEAAAAATNATTSAAAAAAATTIVNDNQVKVCTLEDMELLIPTVLRPEDFSQPQLDSDQLRDIELQLSNSLPVDQSDSGLSSVVMPTEPTIASGESGNVSIGAQFLVMPDGSLQQVDDGGVVFEYIDDSKRQTTSTNTTLQNLLDDSKPDVSYNAMDIDVNHLVTDPLPQITVKPPTRPGPAAVAALKHKCKLCPKAFPTVARLKSHQLTHSHLPKFYCDQCSYYSLRSADLIQHYMEDHNTSIGESKSQLEKSSLSTTDRSRSYSCDLCLFDTPSSVQLRKHYGDKHLMQPSEVQLRPSWNDESKEKGSDQNQLRNSQPAVSHIPLGIKYSTASELRVTSESSATSAMHLPQQQAQPTTTSVVSPTGEINVVVDATTMFYAATAAATSVEATATTTTTSTIATESNEYAIFPEQSFANSMTTTTTLTREAVNSTAVAPPGNPNCSIFGDMQDFIDDTDVAAVCTIPADDMPVVDGDDIVIDNNNMSLDFDAENLFEDFEEDVEVGEVDDEDDEEDAENDDENDNNDAAADQNLLLTSDDDDVDDFDDEQSKHLQKPYCIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKRMPTRDMVQAKGDKILVERTAIEKLNTNIEKPPMLMCAKCPFECEQEAEMRKHLNAHHGINDGVSAHANEVFIIRKLPFECPRCIRSFAAKRTLTRHLQRSHLVDTIIEMQAPQLTTSSAATTTTSTATTTLPKNDSDGCVDNKATFMDNLRQRDFGNADGDGNGKCEDRAINSDTGIETDIEDIDTKPSTTTRSGIETTTAAKANDNVKQTNTEDFTTSTARSEPSTPLATLAIAETSAKTPTTTVNSTLFTTPTCFDFDLDFIGNGSLKSSNESFNIISSSRQLLNGSDKLLTAALEPSPVKDLRPKLPRTPIYVCKQCNQTFDELGKLLQHEVEHHSNGTASMRRNYQHQCNICSSSYRTVTLLNYHMKRHAPRKVQCTQCTKEFTTNSEMEEHVELEHVVSEYVKSEHVQSEHVETEQGHKVPMICGIDGCTKTFNYKHHLKRHQTASHTPVRYVCRQCGRDMLTSLNLRHHMYSHKSSHSYKCPKCVRTYIRGNSFKRHALREHKWNPTDGEMAKIYCLNETPPSMQYGIRELRSVNADNEHSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00602106;
- 90% Identity
- -
- 80% Identity
- -