Dqud006370.1
Basic Information
- Insect
- Drosophila quadrilineata
- Gene Symbol
- ZFX
- Assembly
- GCA_018150725.1
- Location
- JAECWN010000323.1:2935813-2938176[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.22 13 6.4 6.1 2 23 244 265 243 265 0.96 2 12 0.00071 0.042 14.2 0.9 1 23 271 296 271 296 0.95 3 12 0.019 1.1 9.7 0.2 3 23 305 328 303 328 0.92 4 12 0.00038 0.022 15.0 3.9 1 23 338 360 338 360 0.96 5 12 6.7e-05 0.0039 17.4 0.1 1 23 367 389 367 389 0.97 6 12 0.0076 0.45 11.0 0.5 1 23 395 417 395 417 0.97 7 12 0.00026 0.015 15.6 1.6 1 23 423 446 423 446 0.98 8 12 0.098 5.7 7.5 4.9 1 23 452 474 452 474 0.93 9 12 0.0001 0.006 16.8 4.8 2 23 481 502 481 502 0.97 10 12 2.2e-05 0.0013 19.0 0.6 1 23 594 617 594 617 0.95 11 12 2.1e-05 0.0012 19.0 1.5 1 23 623 645 623 645 0.96 12 12 2.4e-06 0.00014 22.0 0.7 1 23 651 673 651 673 0.98
Sequence Information
- Coding Sequence
- ATGAATGAGGAGGGGAGTGTTTATTCCATTCACACAATATGCCGCATTTGTCTGAACCTGTTAAATAATGATGTTGCCTACGACCTCTTCGCTGTTCCTGGTTTGGCCAAGAGGCTATGCGTCTGCACTTCGCTATCGGTGGAACCGCATGATGGATTCCCCAACAATCTGTGCAACCATTGCAACACCCGCCTTAATGATATGCATGAATTTCAACAAATGTGTGTGGACTCTGTACAAAAGTTCCAAGATTTAGTGGCCAACAATTTCTTTGTTCCTGTTGTGAATCAAATCGACAATGTTGAAGTGTTTTCACAACCGGAAGAGGAAATAGTTGAGGATCGGGTAAATTTTGATCCACTTCTGAATACAAAAGTGGAAGTTATTGAGAATGAGGAGGATGTCTTTAAATTGATTGAAAATGTAGATAAGGAAACGCTGGGCGTGGACAAGACAAATGACTCCACTGAGGAAAGTGATGATCTTGACAATCAGAATGATGATGACTTTCATGTAAGTGAATCCGAGGATTCTCTTCCATTATCTCGTTTAAAGGTTGGTACCAGATCGTCAAAAACTAGGACCATGAAAGTAGTAGTTCGTAATGCCAATGATGATAGTGAAGGCTCCAGCTCAGAATCGGAATCTGACGAAGAATGTGAGAAAAAGCCCAAGCAAACAAAACGCAAACGCATCCCAGCCGCTGAACGAGATCGACACAAGCTCATCGAGTGCCACATCTGCCACTCGAAATTTAAGAGAGCTCTACGCTACGAGGAGCACATGAAGCACCACAACGATCTACTCCCCTACCAGTGCACTGTGGAGACATGCAAAAAGGGTTTCACTACTCCCAGTGGAGTACGTCTTCATATGGATCATTCCCATCCGGAGCTATGTCCGATTATACCCTGCACCTTTCCAGGATGTGACAAGACATTCCCGAAAACGGTACTACTCACGTTCCACATGAAGAAAGTGCACAACGTGGCTAAGCCCGTGATCAAGAGACACGCCTGCACCGAATGCGACAAGGTATTCACGTGTCCAACGGCCCTAAAGAAACACATGTACAAGCACACGGGCGAGGAGCTGCCCTTCGCCTGTGAGGTCTGCGGAAAACGCTTCCCTGTTTACACTGCGCTCCGGGATCATCTGCTTCGACACGCTGGAATTAAGAACCATGTGTGTCCGTACTGTGGAGTGGGCAAGACAACTCGTCAGGAGTGGAATAAACACATTCTAACCCACACAAGGGAAAAACAATACAAATGCCCACAGTGCGATCATGCCACGCACAATAAACAGGCCTTGACCAACCATATCAATGTCGTCCACAAAAAGATACGGAAACACGCTTGCCAATATTGTGGGAAAACCTTTGGGAAATCTTTTGCTTGCAAGACTCACGAGAGACTCCACACGGGCGAGAACTGCGCTTCATGTAATATCTGTGGCAGGAAATTTATGCGCCGGAAGTGCCTAACGAAGCATCTACTAACCCATGAAAAAGGTGAAATTCCAAAAGCCAAAAAGACCAAGACTGAGGCTGATGAAGGCAATCAAAACACATCTGAGAGGGGACTGGAAGAATGCGCGCCTGCAGAGCAGGCCGACATAAAGCCCCCAGAGCCCAAGCCGAACAACTGTTATCGAGTTGAAGTTGTGGATATATCCCAATTGGCAGGATTGAATGAGGTCAATCCCATCTCATCAGTCTCGGTTCCCTCCTGGTCTCAAGCCGCCTCGAATGACTTTCCCGTGACCAAGGATGACCAATATATTTGTCCAGAATGCGGCCGTGGATTTAACCATATGGGCAACATGAAGAAACATTATAAAGCGGTTCACGAAAATGTCAAGGATTTCATCTGTCGTTATTGCCCGAAACGCTTCGCCAGAGCTCAACATTTACGCAATCATGAACTCATCCACACGGGGGAGAAACCTTTCGAATGCAAAGTGTGCGGCAAAAATTTCCGTCAGAAGGTAGTGCTATGGACGCACATGAAGCTTCACACCCAACCGCCCAAAGAGAAGAAACCTAAGAGGCAGGCAAAGAACCCCAGAGGGCCCAAGGTTAAACTCCCACAGGAACCACCAAAGATCCCCTCCGAATACCAAGACCCAGAGGCAGAGCGAGCTGCTGCGACGGCCGCCCTTCAAGCCCAACAGATTGAGGAGGGCGAGGAAAAGCTTAGAAAGCAAGAGAACAATCGAAAGATCCAAGAGGCGGCCAGTGAGCAGCTTAGCAGACTCCAGAAAGAGATTCAAAGCGAAAAGGGCTCCTACGACAGCTACTATGAACAGAAGGCAGATGCCGAAGGTTTAAATCCAAATGTTCTCAAATTGGATCATGTTTAA
- Protein Sequence
- MNEEGSVYSIHTICRICLNLLNNDVAYDLFAVPGLAKRLCVCTSLSVEPHDGFPNNLCNHCNTRLNDMHEFQQMCVDSVQKFQDLVANNFFVPVVNQIDNVEVFSQPEEEIVEDRVNFDPLLNTKVEVIENEEDVFKLIENVDKETLGVDKTNDSTEESDDLDNQNDDDFHVSESEDSLPLSRLKVGTRSSKTRTMKVVVRNANDDSEGSSSESESDEECEKKPKQTKRKRIPAAERDRHKLIECHICHSKFKRALRYEEHMKHHNDLLPYQCTVETCKKGFTTPSGVRLHMDHSHPELCPIIPCTFPGCDKTFPKTVLLTFHMKKVHNVAKPVIKRHACTECDKVFTCPTALKKHMYKHTGEELPFACEVCGKRFPVYTALRDHLLRHAGIKNHVCPYCGVGKTTRQEWNKHILTHTREKQYKCPQCDHATHNKQALTNHINVVHKKIRKHACQYCGKTFGKSFACKTHERLHTGENCASCNICGRKFMRRKCLTKHLLTHEKGEIPKAKKTKTEADEGNQNTSERGLEECAPAEQADIKPPEPKPNNCYRVEVVDISQLAGLNEVNPISSVSVPSWSQAASNDFPVTKDDQYICPECGRGFNHMGNMKKHYKAVHENVKDFICRYCPKRFARAQHLRNHELIHTGEKPFECKVCGKNFRQKVVLWTHMKLHTQPPKEKKPKRQAKNPRGPKVKLPQEPPKIPSEYQDPEAERAAATAALQAQQIEEGEEKLRKQENNRKIQEAASEQLSRLQKEIQSEKGSYDSYYEQKADAEGLNPNVLKLDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00584565;
- 90% Identity
- -
- 80% Identity
- -