Dqud006371.1
Basic Information
- Insect
- Drosophila quadrilineata
- Gene Symbol
- -
- Assembly
- GCA_018150725.1
- Location
- JAECWN010000323.1:2938714-2941095[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.012 0.71 10.3 4.1 2 23 249 270 248 270 0.96 2 12 0.00012 0.0073 16.6 1.8 1 23 276 301 276 301 0.94 3 12 0.1 6 7.4 0.8 3 23 310 333 308 333 0.92 4 12 0.00027 0.016 15.5 3.8 1 23 343 365 343 365 0.96 5 12 0.001 0.061 13.7 0.1 1 23 372 394 372 394 0.96 6 12 0.0077 0.45 10.9 0.5 1 23 400 422 400 422 0.97 7 12 0.0014 0.085 13.2 2.1 1 23 428 451 428 451 0.98 8 12 0.0076 0.45 11.0 4.0 1 23 457 479 457 479 0.96 9 12 2.4e-06 0.00014 22.0 2.9 2 23 486 507 485 507 0.97 10 12 6.6e-05 0.0039 17.4 0.9 1 23 598 621 598 621 0.96 11 12 0.00012 0.0069 16.6 2.7 1 23 627 649 627 649 0.95 12 12 3.7e-06 0.00022 21.4 2.2 1 23 655 677 655 677 0.99
Sequence Information
- Coding Sequence
- ATGAACGAGGAGGGGAGTGTTTACTCCATTCATACAATATGTCGAATTTGTCTGAACCTCTTAAATAACGATGTTACCTATGACATCTTCACTGTTCCTGGTTTAGCCAAGAGGCTTTGCGTCTGCACTTCGCTATCGGTGGAACCGCTGGATGGATTCCCCACCAACCTGTGCTCTAACTGCTTTGGTCGACTTAATGATATGCATGAGTTCCAAAACATGTGTGTGGACTCGGTGCAAAAGTTCCATGACTTAGTGGCCAACAATTTTTTTGCATCTGCTGTGAATCCAATTGACAATGTTGAAGTGTATTCACAGCATGAAGTGGAAATAGATGTGGATCGTGTAAATTTTGATCCACTTCTGAATACAAAAGTGGAAGTTATTGAGAATGAGGAGGATGTCTTTAAATTGATTGAAAATGTAGATAAGGAAACGCTGGGCGTGGACAAGACAAATGACTCCTCCGAGGAAAGTGATGTTCTGGAAAATACCAAGGATCATGATTTCGATGTTAATAGCAGCGAGTCTGGGGATTCTCTACCATTGTCTCGCTTAAAGACTGGAGCCAGATTGTCAAAAACCAAGACGAAGAAAGTCGCTGCTCGTAAAGCCACGGATGATAGTGAATCCTGCAGCTCAGAGTCCGACTCCGATAACGATTACTCTGAAGAAAAGTCGCCGAAAGCAAAGCTCAAACGCAAACGCATCCCAGCTGCTGAACGAGATCGCCACAAGCTCATCGAGTGCCACATCTGTCAGCAAAAATTCAAAAGAGCCCTGCGATACGAGGAACACATGAAGCACCACAACGACTTGCTCCCATTCCAATGTACTGTGGAGACATGCAAGAAAGGGTTCACCACTTCCAGTGGTTTGCGTCTTCATATGGATCACTCGCACCCTGAATTGTGCCAAATGATTCCCTGTACTCATCCGGGATGTGATAAGAAATTCCCCAAAACCATCTTGCTGACATTCCACATGAAGAAAGTGCACAACGTGGCAAAGCCCATCATACGGAGACACGCCTGCACCGAATGCGACAAGGTATTCACGTGTCCAACGGCCCTGAAGAGACATATGTATAAACACACGGGCGAGGAGCTGCCCTTCGCCTGCGAAATATGTGGAAAACGATTCCCCATCTACACTGTACTGAGGGATCACCTGCTGCGGCACGCGGGTATTAAGAACCATGTGTGTCCGTACTGTGGAGTGGGCAAGACGACCCGTCAGGAGTGGAATAAACACATTCTAACCCACACCAAGGAAAAACAGTATCAATGCACTCAATGCGATCACGCTTCCCACAACAAACAGGCCTTGACCAACCATATCAATGTGGTCCACAAACAGATACGGAAATTCGCTTGCCAATATTGTGGGAAAACCTTTGGAAAGTCGTATTCCTGCAAAACCCACGAGAGACTCCACACGGGCGAAGACTGCTCTGAATGTAAGATTTGCGGTAAGAAATTTATACATGAGAAGTCTTTAACGAAGCATTTGCAAACCCATGAGAAGGGCGATGTTCCAAATGTTAAAAACACAAAAGCCCAGACTGTTGAGGATAGTCAGAGCATCTCAAGAATGGGTTTAGAGGAGAGCAATCATGGGGAGCCTGCCGACATAAAGCCGCCACCGCAAAAGGTCAACAAGTCAAATCGCGTAGAAGTTGTGGATATATCCCAGTTGGCAGGATTGAATGAGGTCAATCCCATCTCATCGGTATCGGTTCCCTCTTGGCCGCATGCCATCTCCAATGACTTCCCCAAGAAGGATGGTCAGCACATCTGTCCTGGTTGCGGTCGCGGGTTCAACCATCTGGCCAACATGAAGCTTCATTATAAAGTGGTGCACGAAAAGGTCAAGGATTTCGCCTGCCGCTATTGTCCGAAGAGGTTCGCCAGATCACATTACTTACGGAATCATGAATATATCCACACGGGTGAAAAACCTTACGAATGCAAAGTGTGCGGCAAGCATTTCCGCCAGGAGCAAGTGCTAAGGACACACATGAAGGTGCATACTCAACCTAAGCCACTCAGAGAGAAGAAAGTTAAGAATCAACCTAAGCAACCACGAGGACCCAAGATTGGGCTTAATCAGGAACCACCAAAGATTCACGCCGAATACCAAGATCCAGCTGCAGAACGAGCTGCTGCTACGGCTGCACTTCAAGCCCAACAAATCGAGGAGGGCGAGGCAAAGCGAAGGCAGGAGGAGAACAATCGAAAGATCCAAGAGGCAGCCTACGAGCAACTCAACAGACTTCAGAAGCAGATTCAAAGTGAAAAGGGCTCCTACGACAGCTACTACGAACAGAAGGCAGATGCCGAAGGTTTAAATCCAAATGCTCTCAAATTGGACCATGTTTAA
- Protein Sequence
- MNEEGSVYSIHTICRICLNLLNNDVTYDIFTVPGLAKRLCVCTSLSVEPLDGFPTNLCSNCFGRLNDMHEFQNMCVDSVQKFHDLVANNFFASAVNPIDNVEVYSQHEVEIDVDRVNFDPLLNTKVEVIENEEDVFKLIENVDKETLGVDKTNDSSEESDVLENTKDHDFDVNSSESGDSLPLSRLKTGARLSKTKTKKVAARKATDDSESCSSESDSDNDYSEEKSPKAKLKRKRIPAAERDRHKLIECHICQQKFKRALRYEEHMKHHNDLLPFQCTVETCKKGFTTSSGLRLHMDHSHPELCQMIPCTHPGCDKKFPKTILLTFHMKKVHNVAKPIIRRHACTECDKVFTCPTALKRHMYKHTGEELPFACEICGKRFPIYTVLRDHLLRHAGIKNHVCPYCGVGKTTRQEWNKHILTHTKEKQYQCTQCDHASHNKQALTNHINVVHKQIRKFACQYCGKTFGKSYSCKTHERLHTGEDCSECKICGKKFIHEKSLTKHLQTHEKGDVPNVKNTKAQTVEDSQSISRMGLEESNHGEPADIKPPPQKVNKSNRVEVVDISQLAGLNEVNPISSVSVPSWPHAISNDFPKKDGQHICPGCGRGFNHLANMKLHYKVVHEKVKDFACRYCPKRFARSHYLRNHEYIHTGEKPYECKVCGKHFRQEQVLRTHMKVHTQPKPLREKKVKNQPKQPRGPKIGLNQEPPKIHAEYQDPAAERAAATAALQAQQIEEGEAKRRQEENNRKIQEAAYEQLNRLQKQIQSEKGSYDSYYEQKADAEGLNPNALKLDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00584566;
- 90% Identity
- -
- 80% Identity
- -