Dqud003928.1
Basic Information
- Insect
- Drosophila quadrilineata
- Gene Symbol
- -
- Assembly
- GCA_018150725.1
- Location
- JAECWN010000452.1:6000172-6010136[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.1e-05 0.0013 19.0 2.1 1 23 267 289 267 289 0.97 2 18 7.1e-06 0.00041 20.5 0.4 1 23 295 317 295 317 0.97 3 18 0.001 0.061 13.7 0.9 1 23 323 345 323 345 0.95 4 18 1.5e-05 0.00088 19.5 3.1 1 23 351 373 351 373 0.97 5 18 3.4e-05 0.002 18.3 4.7 1 23 379 401 379 401 0.99 6 18 6.2e-05 0.0036 17.5 5.7 1 23 407 429 407 429 0.97 7 18 3.1e-07 1.8e-05 24.8 4.3 1 23 435 457 435 457 0.98 8 18 1.1e-07 6.4e-06 26.2 2.4 1 23 463 485 463 485 0.97 9 18 6.4e-05 0.0037 17.5 6.7 1 23 492 514 492 514 0.97 10 18 0.00011 0.0065 16.7 6.5 1 23 520 542 520 542 0.98 11 18 9.9e-06 0.00058 20.0 4.5 1 23 548 570 548 570 0.98 12 18 7.2e-06 0.00042 20.5 8.1 1 23 576 598 576 598 0.98 13 18 5.8e-06 0.00034 20.8 7.6 1 23 604 626 604 626 0.97 14 18 6.5e-07 3.8e-05 23.8 7.7 1 23 632 654 632 654 0.98 15 18 0.0002 0.012 15.9 9.5 1 23 660 683 660 683 0.95 16 18 7.2e-05 0.0042 17.3 0.9 1 23 689 711 689 711 0.98 17 18 0.00077 0.045 14.1 4.4 1 23 721 743 721 743 0.98 18 18 9e-06 0.00053 20.2 1.6 1 23 749 772 749 772 0.96
Sequence Information
- Coding Sequence
- ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTATCGGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACGTTAGGCGGCGGACCGTCACAGTTGGCAAACAGCAAAGGGGATCATCATAAGGAAGACGGCAACAAGCCGCCACACGGCATTGAAATGTATAAAGTGAACATTGAGGATATATCACAATTATTTACGTATCACGAGGTCTTTGGCAAAATCCATGGCGATGTGGTGAATCATGCGGCGGCGCTGCACGGCAGCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCTGGTACACAGCAGGGCAGTGCCACGGTGACCACGACTAGCTCAGGTAGCAATGGGAATGGGGGTAACGGGGGCAATGGTAGTGGTAGTGGGGGTAACAACAACTCGACGGCGACAACGGGTGAATTGCTGATGCCAAAAATGGAGGGCGGCATTCATGGCGTTGATGGGCAGTCGAGCGTTTCGTTGGCGCCGGATGGCACGCCCATTGCGACTGGTACGCATGTGTGCGATATTTGTGGCAAGATGTTCCAGTTTCGTTATCAGCTGATTGTGCACCGTCGCTACCACAGCGAGCGTAAGCCATTCATGTGTCAGGTGTGCGGTCAGGGCTTTACCACATCGCAGGATTTGACCCGTCATGGCAAGATCCACATTGGTGGTCCCATGTTCACCTGCATTGTGTGCTTCAATGTGTTTGCCAATAATACGAGTCTGGAGCGCCATATGAAACGGCATTCAACGGACAAACCATTCGCCTGCACCATTTGCCAAAAGACCTTTGCACGCAAAGAGCATCTGGACAATCATTTTCGTTCGCATACGGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTGTGCGGCAAGAAATACACACGCAAGGAGCATCTAGCCAACCATATGCGCTCCCATACTAACGAGACGCCGTTCCGTTGTGAAATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCACATCGGTGCGATTTCTGCTCCAAGACGTTTACGCGCAAGGAGCATTTGTTAAATCACGTGCGCCAGCACACGGGAGAGTCGCCGCATCGCTGCTCCTACTGCATGAAGACGTTTACGCGCAAGGAGCATCTGGTGAACCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATACTGCACGAAGACGTTTACGCGCAAGGAGCACCTCACCAACCATGTGCGACAGCACACGGGCGATTCGCCGCATCGTTGCAGCTACTGCAAGAAGACCTTCACCCGGAAGGAGCATCTGACGAATCATGTGCGGCTGCACACTGGCGATTCGCCGCACAAATGCGAGTACTGTCAGAAGACGTTCACGCGCAAGGAGCATCTCAATAATCATATGCGGCAGCATTCGAGCGACAATCCCCATTGCTGCAACGTGTGCAACAAGCCCTTCACACGCAAGGAGCATCTGATCAATCACATGTCACGCTGCCACACCGGCGATCGTCCATTCACCTGCGAGACCTGTGGCAAATCCTTCCCGCTCAAGGGCAACCTCCTCTTCCATCAGCGCAGCCACACCAAGGGCCAGGAGTGTGAGCGTCCATTTTCCTGCGAGAAGTGCCCCAAGAATTTCATATGCAAAGGTCACTTGGTCTCCCACATGCGCTCGCATTCGGGCGAGAAACCGCACGCGTGCACGCTGTGCAGCAAGGCATTCGTTGAGCGTGGCAACCTGAAGCGCCACATGAAGATGAATCATCCGGATGCCATGATGCCGCCACCACCGGTTCATCCGCATCCCCAAATACCGGCTGGTGTGCTCACCCAGGTCAAGCAGGAAGTGAAACCGATCATAATTCCGCATCATTCGACGACGACAACAATGCACACCATTCAACAGATAACAGCGGGCGCAGCAGCAGCTGGCGCCGGTGCCGTCCAGCTAACGCCAGGCCTGGTAGTTCAATTAGGTGGGTCATTCCAGGACTCCTTGTTTGCCTGCCTGTCTGCCTGCCTGTTTGACTGGAAAACCACCCCTAAAATGTAA
- Protein Sequence
- MQHVSAASSAPSVVSAPVVTTGGGTTITLGGGPSQLANSKGDHHKEDGNKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHAAALHGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTQQGSATVTTTSSGSNGNGGNGGNGSGSGGNNNSTATTGELLMPKMEGGIHGVDGQSSVSLAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSTTTTMHTIQQITAGAAAAGAGAVQLTPGLVVQLGGSFQDSLFACLSACLFDWKTTPKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00560429;
- 90% Identity
- -
- 80% Identity
- -