Dput004013.1
Basic Information
- Insect
- Drosophila putrida
- Gene Symbol
- -
- Assembly
- GCA_037043535.1
- Location
- JBAMBI010000160.1:3246830-3255133[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00024 0.017 15.6 3.4 1 23 289 311 289 311 0.98 2 11 0.0012 0.082 13.4 10.5 1 23 318 340 318 340 0.96 3 11 0.00012 0.0082 16.6 6.5 1 23 346 368 346 368 0.98 4 11 0.00036 0.025 15.0 2.3 1 23 374 396 374 396 0.95 5 11 2.6e-05 0.0018 18.6 0.5 1 23 402 424 402 424 0.97 6 11 1.7e-05 0.0012 19.2 0.1 1 23 430 452 430 452 0.98 7 11 0.00015 0.01 16.3 2.0 1 23 457 480 457 480 0.97 8 11 0.061 4.2 8.0 0.3 1 23 486 509 486 509 0.94 9 11 0.0002 0.014 15.9 0.1 1 23 568 590 568 590 0.98 10 11 0.018 1.2 9.7 2.7 1 23 704 726 704 726 0.95 11 11 0.0052 0.36 11.4 4.9 5 23 739 757 731 757 0.92
Sequence Information
- Coding Sequence
- ATGTGCGCTGCACAGAGCAATCCGCCCTTCGGCTACGCTTGGAGTTTTGCAGACAACGGCAACCGTGCCGCAGAATCAGTTTTGGAGATATCACCAAATATTAACTACACTGTCGGTGGGGAATCGATGCCCTATTTGTTATCCACGGATGGATCATTGGCCGTACAAAAGGATGTTAAAGGTGCACTCGCCAACAATAAAGGCAATGTCGTCCGTCGTATGTTCGTGGTGAACGATTCATTTGCGCCCGGAACACAAAGAGTAATTACCACAGGCTCCGCATCGACGGTGGTCAAAAAACAGGACTCTGGTCAACAGGTGTTAAGCATAAATTCGCTTGATAAGAACTATCTTTTAGTCGATCCAgcgacagcggcagcagctgcagcagcagcagcaggtggtGATCCAGCGTCTGCTGCACATCATCATACATTAACAAATGGCAGCATTGTTGATGCCAAAACTGGACAAACTGTATTGACAACGAGTGCCGCAGCGGCAAAGTCGCATTTTAGCTCAATTGGAGCACTACATCTCACGCAAGAGGAGTGCAATGAGATCTTAATCAAGCGCGCCATTGCTGCCGGCCACAGCCACCATCAGACGCACACACTCACGACTGGCGACGGATCGCACCATCATCATTCGACGGCGCCAGGCTCGACACCAAGTGACATACTTCCTGGTATTTCAGTTCAAGTACAGAAAGTAATACAAGGACTCGAAGAGAACGAGGACTCACAGGGCGACGCACCCAACTTAAAGTTGGAACCAGGCACATTAGAATTGTCCCCAAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACCGACGCCACCATCAAGAAGGAGCGCCCGTACAGTTGTGACGAGTGCGGTAAATCCTTTCTGCTCAAACATCATTTGACAACACACGCACGCGTGCACACAGGTGGTGAACGTCCACATATTTGCACCCATTGCGGCAAGAGCTTTGCGCACAAACACTGTCTAAATACGCATCTACTGCTTCACTCCACCGATCGGCCATATCAGTGTCAAGAGTGTAAGAAGAGTTTTACCCTAAAGCATCATTTATTGACACATTCGCGTGTCCATAGCCGGGAACGGCCATTCGTGTGCCAGGAGTGCGGACGATCCTTTCCCCTGAAACGTCACCTGGTCACGCACAGTAAATTTCACGCCGGCGAACGTCCATACGTCTGCGAGGAATGTGGTGAAAGTTTCGCACAGGAGAACCATCTGATTATGCACTCGCGCTTTCATGGTTCATTGAATCCATTTGTTTGTGCTGATTGCGGTGCCTCATTTCCACGAAAGTTTCAATTGGTTAATCACGGACGCATACACGGCAAGATACCTCATTCCTGTACGGTTTGTGGCAAAGAATTTCTACAAAAGCGCACGCTAGTTTCCCATATGAGGCGTGTACATACCGGAGAGCAGGCGCATCCCTGCGTTAGCTGCGGCGAGGGATTCCTCACCAAAGCGGAGTTGCATCAACATGTGCGTGCAGCGCACAATGGTGTCAATCCCAATACGAGCAGTGCCACCATTATAGCCAATCAACAGcagATACAACAGCCACATCATCACCCCGGGCATCCGCAGACCATTACTGTTGTCAGCAATCCAGCAAACTCCACGCTGCTCACAGTCTCCACAACCGATGCCAATGGTGTGGCACGTCCTCAATTTGTTTGCCGCGAGTGTGGAAGTGCGTTTAATAGTCGTGAGGCGCTTGCCTTGCACTTGAGGTTGCACACGGGCGACAAGAGTCTGATGACAGATCTATGCGCTTTGACAGCAGCGCTGCCTGGACACTTTTTGAGCACGGCAAGTCTCAATCCGGGTACGGTGGTTACGGCCAATCCAAATCTGGTGGCACAGAGTCCAGTGCCCGTGCAAATCATATCGTCCACCGGTCAGGTGATGTCACAGACCACGCTGGTGCAGGCCGCCAACTCGACCCATCCGCAAGCCGTTGTCACCGCTGTGCCCACAATGCCCATACATGGCCAACAGCATCTACAGCATGtgagccagcaacaacagcagcagcagcatgtgGTCACTGTATCGCCGGCCAATAAGCCCAAATCGCATTTCTGTGCCAGCTGCGGCAAAGGATTCGCTGCCAAGCACGGATTAATGCAGCACAATCGACGACATCCTAACGGCGGTTGCACGGTGCGCACCCATGTTTGCGAGTGTGGAAAGGCATTCTTCCAAAAGAATCATCTGATGCTGCATCAGCGACAGCATTTGGAAACAAAGCCAGCCATATCGCAGCAACAGGAGGCCGatgtgcagcagcagcagcaacaacaacaagcagcagcgGCCGCTGGACAACAATCTGCACAGATTGAGGTTCAAATAGTACCCGGTGGCCCAGGAAAGGTGATTAAATACGAAATTTGTCGCAATGTCCTACAAGACGAACAGTcggcacaacagcagcagggaTCAATGCATACGGAATAG
- Protein Sequence
- MCAAQSNPPFGYAWSFADNGNRAAESVLEISPNINYTVGGESMPYLLSTDGSLAVQKDVKGALANNKGNVVRRMFVVNDSFAPGTQRVITTGSASTVVKKQDSGQQVLSINSLDKNYLLVDPATAAAAAAAAAGGDPASAAHHHTLTNGSIVDAKTGQTVLTTSAAAAKSHFSSIGALHLTQEECNEILIKRAIAAGHSHHQTHTLTTGDGSHHHHSTAPGSTPSDILPGISVQVQKVIQGLEENEDSQGDAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTDRPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRSFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCADCGASFPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRAAHNGVNPNTSSATIIANQQQIQQPHHHPGHPQTITVVSNPANSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVAQSPVPVQIISSTGQVMSQTTLVQAANSTHPQAVVTAVPTMPIHGQQHLQHVSQQQQQQQHVVTVSPANKPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQEADVQQQQQQQQAAAAAGQQSAQIEVQIVPGGPGKVIKYEICRNVLQDEQSAQQQQGSMHTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00575764;
- 90% Identity
- iTF_00803779;
- 80% Identity
- -