Dpse006911.1
Basic Information
- Insect
- Drosophila pseudotalamancana
- Gene Symbol
- -
- Assembly
- GCA_037075185.1
- Location
- JBAMCK010000491.1:801913-802736[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.7e-29 9.1e-26 89.8 17.1 2 70 74 142 73 142 0.97
Sequence Information
- Coding Sequence
- ATGGACAGCAAGCAGCCACCGCCGTACAGCGAGATGCCGCAGCCGCatctgcagccgcagccgcagccgcactCCGGCTATACGCCGGCGCAGACCTACCAGCCGTATCCCTCGGGTCCCACACAGCCGCCACTGTACCCACCCATGCCCCAACCGCCACAGCAATCCACCGTTATCATCCAGACAACAACCACGTCCAACTTGGTGCCCATTGGCAGCGGGCCGACCCGCATTCGTTGTCCCTCCTGCCACGCGGAGGTGGTTACCACGGTTAAGAGCACACCTTCCAGCCGTACTCACTGCTGGGCCTTGATTCTGTGTCTATTTATCTGCTGGCCCTGTGTTTGCGTGCCCTACTGCATGGACTCCTGTCAGAATGCCAACCACTACTGCCCCAACTGCAGCGCCTACATAGGCACCTACGACAACtaa
- Protein Sequence
- MDSKQPPPYSEMPQPHLQPQPQPHSGYTPAQTYQPYPSGPTQPPLYPPMPQPPQQSTVIIQTTTTSNLVPIGSGPTRIRCPSCHAEVVTTVKSTPSSRTHCWALILCLFICWPCVCVPYCMDSCQNANHYCPNCSAYIGTYDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01356513;
- 90% Identity
- iTF_00538625; iTF_00532771; iTF_00545638; iTF_00559881; iTF_00573709; iTF_00516658; iTF_00544882; iTF_00540757; iTF_00510200; iTF_00568635; iTF_00587067; iTF_00522605; iTF_00525549; iTF_00549215; iTF_01327544; iTF_00620253; iTF_00495525;
- 80% Identity
- -