Dpse007207.1
Basic Information
- Insect
- Drosophila pseudotalamancana
- Gene Symbol
- -
- Assembly
- GCA_037075185.1
- Location
- JBAMCK010000523.1:1084163-1090097[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.047 3.3 8.4 0.2 1 23 1302 1325 1302 1325 0.94 2 13 7.6 5.3e+02 1.4 0.2 1 23 1485 1507 1485 1507 0.91 3 13 0.00017 0.012 16.0 2.7 2 23 1510 1531 1510 1531 0.97 4 13 6.5e-05 0.0045 17.3 0.2 3 23 1539 1559 1537 1559 0.98 5 13 5.4e-07 3.8e-05 23.9 4.1 2 23 1566 1587 1565 1587 0.97 6 13 5.1 3.6e+02 1.9 0.4 5 23 1600 1618 1598 1618 0.96 7 13 1.3 89 3.8 5.4 3 23 1625 1646 1623 1646 0.93 8 13 0.13 9.3 6.9 0.1 2 23 1657 1677 1656 1677 0.96 9 13 5.2e-05 0.0036 17.7 0.4 1 19 1683 1701 1683 1705 0.95 10 13 1.5e-05 0.001 19.4 0.5 1 23 1713 1735 1713 1735 0.98 11 13 9.7e-05 0.0068 16.8 7.6 1 23 1741 1763 1741 1764 0.96 12 13 0.00019 0.013 15.9 5.9 1 23 1769 1791 1769 1791 0.98 13 13 0.027 1.9 9.1 8.2 1 23 1797 1819 1797 1820 0.95
Sequence Information
- Coding Sequence
- ATGGTGGACAGTGTGCAGTGCCCCGTGTGCACCCTGTATCTGCATGCGGGCATGACTCTCTCCGATCATTTGGAGACACATCCGAAGGAACAGGTCATCAAGGCTCTGGTGCAAATGACCATTGTTAGCAACAATGGCATGAGCAGTGCACTGGCGGCAGCTATGCTTTCCGGCAGTGGTCCGGCAATAGATGGCGGTGCGCCCTCCACCTCATTATCATCCTCGATTGCGGGTGACGTGAAACCAGTTGTGCCAGCAGTTGTATCATCACCATcgccaccaccaacaacaacagcatcgaaATCTACAGCACCCAAAGCTGCAttgcccaacagcagcagcggcagcagcagtagcagcagcagcagtagtagcagctgtgggagcagcaacaacaaattgagcAATCCACCGATAAAGGCAGTTAAAACAGCGCCACCCACGACTGAGGCGCCAGCCAACACATCAAACACACCCACCACTAGCAGCGTGACTGCCATCTATTCCGACTATCGCTatgaccagcagcagcagcagcaccaccagcaccagcaccagcaccagcaggtaacgccaacaacaacaaccgcgcTGCAGGGCTTTGCACGCGGGGCCACCACGCTGGTAATACCGCAGGTgccacatcagcagcagaatCAGCAGCATCAGTATCTGGCCGCCCAACAGCAATCCACGCACTTTGCACATCatccgcaacagcaacagcaccagccgGCCATGAAATATACTTATGCAGCAGCGCTTCCACCGCCTCCTCCACTGCAGCTTTTTGCACAGCAGGCATCGTCAACACAGTCGCATACGAAACCACCACCCGCCTATGGCGCTGCCATCAGTCAAATTCGATCTCAGCACAAccaaaataagcaacaacaacaacagcagcagcagcaacaacagcagcagcagcaacaacagcagcaacaacagcagcaacagccacaacaacataTAACCGTTCAACATAACGTTAACCTTGCACCACCGAGTGGCAAACACAGTAAACTTCACACGGATATCTTCTTGAAtccaccaccaccgccacaGCTCACAATACCGTCAACAGCGTCGACTGCCTCATTAAGACTGCAATATccacaacagcaccaacaatcCCTTGCAGCctgcagtagcagcagcagtagcagctaTGCAGCGGCCAACTGCCCCAGCTCCTCGTCCGCATTGATGACATCGAACTCTGGACGCACAAGCAGCACTCGTCAGACAACCAATTCGCCTTTTGGTGCGCTGCTAAACGCGGCAGCACAGGCTGCCTGCGCTTCACCTGCCTCATCCAGTGCATCTGTCCTGCGCTTTGCGGAATCGCCAGTGGCTCACTATTTAGAGCGAGACAATGGCGATTTCATTGTCCAAGAGACTCCCAAGCATATTGTGGAGTGCGTTGAGAAGGAGGACGGCGAGTTTTCTGTGATTGAGCGCATCTACCAGTCACCCCCCAGCGTGTTACACATacacgacgatgacgacgacgacgaagaggaggaggatgatgaGGACAAGGGgtGGACAAACAGCGATGTTGAGGACCATATGAAAATGGAAGATCATGTGGAGGATGGTGACGATGAGCACGAGGATAGCCGCAGCAGAGCTCCATCCAAAACTACTACAACGAAGAAGTCACGCAAGGCCAAAACAAACGGACGAAAGCACAAACGCGCCAGCAAGCATCAATCAGAAGATGAGGACGACTTTATGAGTATAGGAAGCAGCTGCGCCGAGAGCGAACATCTGTTAGATCAGGAGGAGAACCATGGCCAGGGTCAACAATCGCATGTGTCACAGCTCCCGTCTTCGCCAGGTCAACTCTGCACGGCCCCTTCGACGAGTAGTGGagcagttgctgcttctgctgccgccTCCAGCAATAACACCACCAAGTCCAAAAAAAATCGAGTGACAGTACTTAGCGATGTGCCGCTCAATATGAATGAGTACTTGGATCTAATGGGCAATATTGTAGCTTCGAGCCGCATGGGCGCAGCTCGTCCGTTTGCCGCTGTGGCTCCCATACCGTTGGTCAAAGTGGAGAAGGAGGAGCCCCTGGATGACTACGATAGCGTGCGAGCTGAGGTGCAAACAGTGGAGCAGAAGCCCAACCTTGAGAAtgccagtggcagcagcaatagcagcaacagtggTCATGGCACCACCAGCGTAATTCGGATGGcgagcaccagcagcagcacaaacgTTGCCAACGACGATCTCACACAGCCGCCGCAAATGAAAGTGGAGGTAGAGCCGACGGTTCTGCTGCCACAACGCTTCTCAGCGCCTGCGCAGCATCGTGGTCCCAAGAAATTAGTCATCAAACCAAAGGCCTCAGCTCCGGCGACATCGACGGCTGCAACGACTAAAAAGACTGACAACAATGCtcctggcagcagcaactacgcCGAAACACTCAGCATATCAAAAGCGGCCTCAGAGCTTGTGCAGGTCAAGAGCGAGAATATGGAAGCGCCCACAACAAGTGGTAGCATTCTGGAGAAGCATCTGACCACCAGCTACACGGCACTGCAGGCCCGCAAGCATTCATCAGTCAACGATGACGATGCTCGCGTGCTGCTGGAGTTCGCCAACtcgaagcagcagccgccggcTGGCAACAGTAATCAGACCACATTTGTGGTGAATGCAGCCAGTTTTGCTTCGCCAGGTTCCGTATTTGCGAGCAGTAGCAACGCGCAGAAGTCCACCAAGCCGGGCGATGAGTACATTTTGCCTGACAACAATTTGGAGGTGGATGAAATTGTGATATCCTCCTCGTCTTCCTATACCTCCaactcgcagcagcagcagcagcagcagcagcaagcatcgcagcagtcgcagcagccgtCCTCCTTTACAGATTTCAACTTTCTTTATCATCAgcatgcaacaactgcaactgcaacaacaactacggcGGTAACAACAAACGCCTCTCCATTTGCACCATTTGGcattcagcaacaacaacagcagcagctgctgcagcatcccCAGCATGGCTCAAGCGAAGCCACTAACGCTGCCACGCTGGCCTCCTCATCGAGTAACTCGTCAGCCCTGGATCAGGATTGCTCCATGAATGCTACGTTTCGGATGGGCAAGCAGCAGTCTACAATGGGTCCCTGGTATCAATCACAGCAGCATCCGCAGCCGCAGGCAAGCACTTCACATAGTTCCAATGTAGAGCAGTCGAGCAATTTTATTGCCGCACTCGCAGCCGTTGACTGCTCCAGCGCGGCGGCCGTCGATAGCGACGTGAGCGAAGCCAAGTATTTGGATCTGGATACCTGTAAGCGGGAACAGTtaagcaatagcagcagccaTTTGCCCTCGGCTTCTGCGTCCACAACATCCTCATCATTTGCAGCCGCCCCCACGGAGAGCAGTCTGGTTGGAGGTTTGGGTCTAAACATACGCACCGATGAGAAAATGCCTGCCAAGGGTGAAATATCCGAACAGGAAAGCAACTGTGACATTGAAAATTCCTGGAGTCAATCGATGTACGGTGATTTATCACAGCGTTTCTTTCGGAATCATTCTACGGACGGATATAATCAGCTGCTGGCCGATTGGCGTCACGACTATTATCCGGCGCAGGATCTcagtggccagcagcagccagagcGTGAACAAAAGCGttttgatttTAACGCTGTCGCCTCGGACTATGCTCAGGCGGGCCAGTTAGATACCTCCTCGAGCTCGACCAGAGACAATCATTTGTTGGATGCACAGCCTACCACTTCCTCGTCGTCATCGGCTTTGCTGGCTGGTCCACCAATAGCCTCGACGTCACGCGCTGCTGCCGAAGCAGAGGCCGCAGCGCAGGCCCAACGAAAGCCTCCGCGTCGCAAAATCTACAAGTGTCCCCACTGTGTGGCCATATTTGAGAAGTTGAAGGAGCGCAACGCTCACATGATTGGCGAGCACAATTATGTGCGGCAGAACCGACGTCTCATTTGCACCCAGGCGATGGGCAGCACGGCCTTGCAACGGTCGCAGGATATGGAGGTacaacagcatcagctgctgcaggcAACGGGGCACGGCAATAACGACATTGTACTTGATGATTCTAAGGATGGCATTATAAAGATCAAGCAAGAACACTGCCATGATAAACAGGATGCATCAACGCAATTGCTTGGACATTCAGAGTTGCCCGACGTAAAGGATGCGGGTCTTCTAAACGGCAGCGATGAAGGTGGTCGTGATTCCGACATGAAGCCGCCAAGCGGTGGTATAGACGTAGACGAGAAGCCTGCCATACCGCCGTTGGCCATGACCACGCCAGCTGCCAAGCTAGCGGCGCTGTATCGCATGCTCATTGCCTACAATGAGTCCAAGTTGGGTCAGGAGCGCAACAATCTTAACGAGCTGGAACAAAAGGCAATGGAGAAATCTATATTCTTATGTTACGTGTGTCGCACCGATTTCCCTTCTGTTAAGCTGTATGATGCGCACTTGACTGAGCATCCCGCCGAGTGTTTCACCTGCGGCAAGAAATTTTACCGCTGGAAGAACTTTTCGCTACATCTGAAACGGCATCTGGGCTGGAAGGAGTTCGGCTGCTATGTCTGCGACAAGAAGTTTGTGGTGCGCAGCGCTCTCGTGGAGCACATGCGCATGCATACGGGCCAGACGCCGCTTAAGTGTAAAATATGCGGCAAAAAGTTTAAACGTTATTCCAACTTGACGCAACATCGCAAGCGGCACACCAAGATTTTGGTGCGCAAGAAAGAGTACGTTTGTCATTGTGGCGAGGTGTTGCCATCCAAGGCTCGCTTCCTTTGGCACAAAGAAACCCACGACTTGAAGCCCAAATGCTGTCCATATTGCTGCGATCGCTTTGTGCATGCCAATTCCCTGCGCCGCCACATTCGACTGGCGCATTCGGACAAGTTTGACTATGCTGAGCCAGTGGAGTGCCCCATGTGCAAGCAGATATTTGCAAAGACATCCATCAAGGCCCACATGGCCACACATTCGACAGATCCGCAATATGATTGCGCCATATGCAATAAGAGTTTCTCCACCAAATGGAATCTCAAGATACATTCGTGGGTACATGCGAATCGGACGGCCAAACCTTTTAAGTGCGAGTACTGTCCCAAGGCGTTTGTGCGCGAGCTGGACTTCAAGAACCACATGAACGCGCACAAGCAGATCAAGCCTTACACCTGTGAGTATTGCGGATGTAAGTTTATACGCAAATACAACTATATGCGGCATCGGCGGGAGCATCATGGCAATAAGAAGTTCACCTGCGACCAGTGCGACAAGTCTTTCCATCGTCATTATTATTTGATCGAACATCGGCGCATCCACACAGGCGAACGTCCGTTCCACTGTACGATCTGTGGCAAGAGCTCGACGACAAAGACCAATCATAATAAACATCTGAAGATTCATCATTCGCGGGATCCATTCACCGTGGAAGTTTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMTLSDHLETHPKEQVIKALVQMTIVSNNGMSSALAAAMLSGSGPAIDGGAPSTSLSSSIAGDVKPVVPAVVSSPSPPPTTTASKSTAPKAALPNSSSGSSSSSSSSSSSCGSSNNKLSNPPIKAVKTAPPTTEAPANTSNTPTTSSVTAIYSDYRYDQQQQQHHQHQHQHQQVTPTTTTALQGFARGATTLVIPQVPHQQQNQQHQYLAAQQQSTHFAHHPQQQQHQPAMKYTYAAALPPPPPLQLFAQQASSTQSHTKPPPAYGAAISQIRSQHNQNKQQQQQQQQQQQQQQQQQQQQQQQQPQQHITVQHNVNLAPPSGKHSKLHTDIFLNPPPPPQLTIPSTASTASLRLQYPQQHQQSLAACSSSSSSSYAAANCPSSSSALMTSNSGRTSSTRQTTNSPFGALLNAAAQAACASPASSSASVLRFAESPVAHYLERDNGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDDDDEEEEDDEDKGWTNSDVEDHMKMEDHVEDGDDEHEDSRSRAPSKTTTTKKSRKAKTNGRKHKRASKHQSEDEDDFMSIGSSCAESEHLLDQEENHGQGQQSHVSQLPSSPGQLCTAPSTSSGAVAASAAASSNNTTKSKKNRVTVLSDVPLNMNEYLDLMGNIVASSRMGAARPFAAVAPIPLVKVEKEEPLDDYDSVRAEVQTVEQKPNLENASGSSNSSNSGHGTTSVIRMASTSSSTNVANDDLTQPPQMKVEVEPTVLLPQRFSAPAQHRGPKKLVIKPKASAPATSTAATTKKTDNNAPGSSNYAETLSISKAASELVQVKSENMEAPTTSGSILEKHLTTSYTALQARKHSSVNDDDARVLLEFANSKQQPPAGNSNQTTFVVNAASFASPGSVFASSSNAQKSTKPGDEYILPDNNLEVDEIVISSSSSYTSNSQQQQQQQQQASQQSQQPSSFTDFNFLYHQHATTATATTTTAVTTNASPFAPFGIQQQQQQQLLQHPQHGSSEATNAATLASSSSNSSALDQDCSMNATFRMGKQQSTMGPWYQSQQHPQPQASTSHSSNVEQSSNFIAALAAVDCSSAAAVDSDVSEAKYLDLDTCKREQLSNSSSHLPSASASTTSSSFAAAPTESSLVGGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDLSQRFFRNHSTDGYNQLLADWRHDYYPAQDLSGQQQPEREQKRFDFNAVASDYAQAGQLDTSSSSTRDNHLLDAQPTTSSSSSALLAGPPIASTSRAAAEAEAAAQAQRKPPRRKIYKCPHCVAIFEKLKERNAHMIGEHNYVRQNRRLICTQAMGSTALQRSQDMEVQQHQLLQATGHGNNDIVLDDSKDGIIKIKQEHCHDKQDASTQLLGHSELPDVKDAGLLNGSDEGGRDSDMKPPSGGIDVDEKPAIPPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLNELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKILVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPVECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516419;
- 90% Identity
- -
- 80% Identity
- -