Dpse002636.1
Basic Information
- Insect
- Drosophila pseudotalamancana
- Gene Symbol
- -
- Assembly
- GCA_037075185.1
- Location
- JBAMCK010000198.1:32309-35625[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.1e-06 7.9e-05 22.9 1.0 1 23 225 248 225 248 0.95 2 17 0.00075 0.052 14.0 2.9 1 23 255 277 255 277 0.98 3 17 0.36 25 5.6 0.1 2 23 309 330 308 330 0.94 4 17 0.00096 0.067 13.7 4.1 1 23 422 445 422 445 0.97 5 17 0.086 6 7.5 0.2 1 19 452 470 452 472 0.95 6 17 0.0072 0.5 10.9 4.0 1 23 482 504 482 504 0.95 7 17 2.1e-06 0.00015 22.0 0.8 1 23 511 534 511 534 0.97 8 17 9e-05 0.0063 16.9 1.2 2 23 542 563 541 563 0.96 9 17 0.0057 0.4 11.2 0.8 2 21 590 609 589 610 0.94 10 17 0.013 0.9 10.1 2.2 1 23 664 687 664 687 0.96 11 17 0.015 1 9.9 0.9 2 23 725 747 724 747 0.94 12 17 0.00036 0.025 15.0 1.0 2 23 788 810 787 810 0.95 13 17 0.00085 0.06 13.8 0.3 1 23 824 846 824 846 0.95 14 17 0.00013 0.0093 16.4 1.6 1 23 852 874 852 874 0.99 15 17 3.5e-07 2.5e-05 24.5 2.6 1 23 880 902 880 902 0.98 16 17 4.2e-05 0.0029 18.0 3.6 1 23 908 930 908 930 0.97 17 17 0.0021 0.15 12.6 0.2 1 23 936 960 936 960 0.90
Sequence Information
- Coding Sequence
- atgaaattgccCATGATGTGTCGCACTTGCGATGCACGGGACACGGATAAGCTATACAAGCTGGCTACATCTACTAAACGATTTCCAGATAAACAGCTTGCCGACATTTTAGCTGAATTGACGCACATTGAATTGGACGAAACGTTGGCGCAACAGATGCCACAGTGTCTGTGCGGAAATTGTGCAAGGAAGCTAATAGGCGCCTATTATTATGTGAAGCAGGCAGTCGCAGCGAATGAACTGCTCATGAATCATGTGGACCGCCTTGGCAGAGACAAATCTGCTGTTAACGACTGCCTGCAGGAGGCGCCAATGGAGCTTTGTGCCGAGCAGCACGTGGAAATCAAAATGGAAACAGAGGAGGAAGAGGCGGAAAATGATATAACTTGCACAGAACTGCCGGAGTTCACAACAGTACAAAATGCCAACGATGTAACGTTGGAAGTGGATGCATGCCATGAGCTCGATAACAAGAAGTCTGATGATCCTCTCAACATGCTCGAACCAGTGAAACAGGAGGAGGAGTCAATGAATGCAAGGACAACCTATCTACAGGAGCCGGAATATAAGGCTGATATCGAAGATGAAgaATCCCTTGACGATTTGCCTCTGCAACAGCGCGTACGCAAGTGGAAACAGACCGACAAACTGCGAACCATCAAACGTTCCATTTTCAAATGCACCGAGTGCCCCAAGAGCTTCAAGCGACCGGAATATCTAAAGCAGCATGCAACACGGGCGCATAAGTCGAAGACTGATTGGTTCTCCTGCTCCTATTGCATACGCAAATTCAGCCACCGGGAGGCGCTGCAATCGCATCTGAAGGTGCATCGCGATTCCAAACGATCTGCGAATCTGGGCGAGAGCAAAAAGGCCAAGGATATAGATTTAAACATGTGCAAGCCGCATGGCTACAAATTGATCGAGTGCATGATCTGTCAGAGTCAGTACGATAAAATTGCGGATTTGCGACGGCATCTGGAACAACATCCAGAAATTGTTAGCTTTGGAGCACGCTCCAATATGCAACCGCATGAGTTAGCTGAGCTCTTCTATCCAGATGCCAAGCATTTGAGTGTGGAGCAACTAAAAACCCTCATACGCAAGGACTTGGATGCGGGAATTTATCAACGTTTCTACTCCATAACCAACCAGTCAGGCTATGAAATGGATCTGGACAGCTCCGAGACGGAAAGCGAGGCTGAACGGGATGCCGATGAGCAgaccaaacagcagcagctccgcaGTATACCCAAAGCCAAATACAGCTGCGAACTGTGCCACGAGCGGTATCAACGCAAATACCAGCTCTTCGATCATCAACGTCTGACGCACGCCTGGCTAGATGCTCCCCATGTCTGCGGACGTTGTGATGCGCGCTTCGTTAGTCtacagctgctgcggcagcacAATGAGCTGCAATGCAAGAACGCCCAAAAACGTTTCCTTTGCCATAGATGTCCCCTGCGCTTCCGCTGGCGTCATAATTTAAAGGCGCACATAAGGGAGCATCGGATTATTAATCAAACGTACGAGTGCAACGATTGCAAGCGGGTCTTCGACAAAAAGAAATCGCTGACGGTTCACATGCTAAGCGTTCATGCGGAGGAGTCGAAGCTAATACCCTGCCAATGGTGCACGCGCAAGTTCTATCGTCGAGACTACTTGGTCAAGCATTTGAAGCGTCATGGAATACGGGAACAGGATATACCGCTGGCCGAGACACTCATTGCGGCGACCTCGAAGCCGAATGGCTTTAAGCGGATTACATGCAAGATTTGTAACCTGCACTTCGAACGCATCTGCGATCTGCGAGCGCACATTCAGCTGGAGCTGAAATTGTCTTTGTCGCTGCATCAGAACTTCGACTCTCTTCACAACTACTCCATCACAAATGAATCCGGCTACGAGCTACAGCTCGGCGACTCCGAAACGGAGGATGAGTTGCAAATGCAGCCGAGGTCCTCCTCCCCCAACACGCGTCTCGTCTACGTCTGTGAGCTGTGCAAGGTGCAGTGCAAGCGGAAGTTCGAGATGATCCAACATCAAAGGGCGATGCATCGCTTCGACAAGATGCCACACGAGTGCGAACTCTGCATATTCAAGTGTGTCTGCAAGAGCATCATGGATCAGCACAGGCAATCGCAGTGCCAGAGCGCCGAGAAGAAACTTTCGTGCAGTAAGTGCAGCTATAAATTCATGTGGCAGGAGAATCTGCAGCAGCACATGCTGTTGCAACACGGCGGTAACATGGAGGAGCCGTCTGCACCGCAAACAGCGACTGCACTGAATGAATCGTCTGATCGGCTGTCCGCATCGGCAGCTAACGCCGACGCTCCGGCGGAGGATGTTCAACTGCTGCAGTGTCCGCACTGCGATCGCACGTACCAGATGAAGGCGCGGCTGAACAATCACATACGGGATGTGCACATCAATGGTGACCGCAAACGGAAGGAGGCCGTCAAGAAGTTCCTTTGTTCGCTGTGCGGTCGAGAAACGCAATCGGCGGCCACATTGGTCACCCACATGCGTCGTCATACGGGGGAGAAGCCCTTCAAATGTGATCTATGCGAAATGGCCTTTCCGCGCCACTCCGAGATGATGTCCCATCGACGAATGCACACGGGTGAGAAACCCTTCCACTGCACCGTCTGTGGCAAGGACTTCGCTCGCTCTGACAAGCTGAAGCGGCACATGTTAACCCACAGTGGTTTGAAACCACACAAATGTAGCTACTGCGAGAAGAGCTACAGGCAGGCGAAGGATCTAAAACTCCACCTGCAGCAGCACACGGGCGAGTGTCCTTTTATCTGCGGCACATGCGGCGAACGTTTCATACAGGGCACCGCTCTGGAGAAGCATCGCATGATGCGTCGACACTTTGACGAGGTGGAGGAGCGAAGCACCACCCACACAGCAAACGCCTAG
- Protein Sequence
- MKLPMMCRTCDARDTDKLYKLATSTKRFPDKQLADILAELTHIELDETLAQQMPQCLCGNCARKLIGAYYYVKQAVAANELLMNHVDRLGRDKSAVNDCLQEAPMELCAEQHVEIKMETEEEEAENDITCTELPEFTTVQNANDVTLEVDACHELDNKKSDDPLNMLEPVKQEEESMNARTTYLQEPEYKADIEDEESLDDLPLQQRVRKWKQTDKLRTIKRSIFKCTECPKSFKRPEYLKQHATRAHKSKTDWFSCSYCIRKFSHREALQSHLKVHRDSKRSANLGESKKAKDIDLNMCKPHGYKLIECMICQSQYDKIADLRRHLEQHPEIVSFGARSNMQPHELAELFYPDAKHLSVEQLKTLIRKDLDAGIYQRFYSITNQSGYEMDLDSSETESEAERDADEQTKQQQLRSIPKAKYSCELCHERYQRKYQLFDHQRLTHAWLDAPHVCGRCDARFVSLQLLRQHNELQCKNAQKRFLCHRCPLRFRWRHNLKAHIREHRIINQTYECNDCKRVFDKKKSLTVHMLSVHAEESKLIPCQWCTRKFYRRDYLVKHLKRHGIREQDIPLAETLIAATSKPNGFKRITCKICNLHFERICDLRAHIQLELKLSLSLHQNFDSLHNYSITNESGYELQLGDSETEDELQMQPRSSSPNTRLVYVCELCKVQCKRKFEMIQHQRAMHRFDKMPHECELCIFKCVCKSIMDQHRQSQCQSAEKKLSCSKCSYKFMWQENLQQHMLLQHGGNMEEPSAPQTATALNESSDRLSASAANADAPAEDVQLLQCPHCDRTYQMKARLNNHIRDVHINGDRKRKEAVKKFLCSLCGRETQSAATLVTHMRRHTGEKPFKCDLCEMAFPRHSEMMSHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPHKCSYCEKSYRQAKDLKLHLQQHTGECPFICGTCGERFIQGTALEKHRMMRRHFDEVEERSTTHTANA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00519319;
- 90% Identity
- -
- 80% Identity
- -