Dpse000231.1
Basic Information
- Insect
- Drosophila pseudotalamancana
- Gene Symbol
- -
- Assembly
- GCA_037075185.1
- Location
- JBAMCK010000007.1:315694-317286[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-16 2.4e-13 49.6 0.0 2 45 361 404 360 404 0.95 2 3 0.055 98 2.8 0.0 28 37 434 443 433 448 0.90 3 3 9.9e-19 1.8e-15 56.4 0.0 2 42 470 510 469 511 0.96
Sequence Information
- Coding Sequence
- ATGGGGCACTCGTCCACAATAATGGATATACAGCGCGTTCTGCTACATCAACAGAGCATCAATCACCAGTGCGAGGTATTGCTTGTGGCCAAAGACGGCATCAGTGTTCGCGCTCATCTCTTTGTGCTAAGTACCTGCAGCGATCTGATGCGCAATTTGCTGGTCGATTTACCCGCTGGTCAGGAGGCGACTGTCATTTTGCCAGACATCCGCGGGGAGCTACTTGACAGCATGTTGTCGTTTATTTACATGGGAGAAACCAACTTACCCTCAGCCCTGCTCACCGAGTTTCTCGAGGCCATTAATCTACTTGGCATCAAGTCCGCCATAAGTTTTGAGACCAATCCCACAGCAATGACAACCTCGAATGTTATAAGCGGCGCTATGGCGGTAGAGGCAGCAAAGTCAATTACCGGACTACATATTGCGAATACAACTCTCatggaggaggaagaggaagaagaagatgccCATGCTGTAGTTGGTAAATTGGAAGTAGAAAATGCTGTACTCACAAATCCTCAACAGCACGATCATGACGGCCGAACCCTAGAATTTCTTGATGTGTACGGCGAACAGCCCAAAATAACGTATTCGATTGAGCACATGGGAGGTACAACCAGTGGAAACCAATATATACTAACAGAAAATACAGGAACATTTACCATAACACAATCGGCATCGTCGGTGGCTAAGTTAGGTGTGCAAGGAAGTTCCACAGTAGTGGACTCGGTGGCGACTGGTGAGCTAGGCGACGATGATGTCGATGCTGATGTGACTGACGAGCACGACGAATCCGAGTCACAATTAATTGAGGAGGAATATGTTGGCTCGGCAGATCCGTTAATAGAGATGACCGCGGAGGCAGATGTAGATATGCACGAAGATGGAATGCAAGATGgagacgatgacgatgatgacgagTTACTGGATGTGAAACCTCGAAAATCTCACCTGGATATGAAATTGTTGAAATCAAAGGCGCGCCAACGTTCCACATCGGCAAAGGCATCAAAGAAGGCAATGACAAAACAGCATGAACAACACGCTGCATTTAAAAAGGAATGCAAGGACAACATCAATGACGCCCTCGAtctggcagcggctgcagtaCTCCACGAAGGGCTTAGTCTACAAAAGGCTGCTGACCGTTACGACATATCAAAAACCGTCTTATGGCGAAGAGTACGCGCCAATCCAGCGTACATGAGAATTAAACGGGAAAAGCCATCGCTTTCGGAAGCGTACGAGCGCCTAAAAAATGGCGACTCATTGAAAAGCATAAGCCAGGATCTCCATATACCAATGTCCACGTTACACAGGCACAAGGTGCGGCTTGCGGCGCAAGGTCGTCTACCCGATTTTGTTGCCTGCCGGCGGAGGGACAGTACGCCAAAAGACGAGCTGCGGGAGAAGTTGGCCAAGGCAGTGCATGCCTGTATAAACGAAGGCATGACGCAGAATCATGCAGCGAATCTCTTTGAAATACCTAAGAGCACGCTTTGGCGGCATTTGCAACGGCGTGTAACCGATGCGGAGCGTAAAGTCAAGGAAGAACAGGAGGATGACGATGAAGAAGACgctttgaattaa
- Protein Sequence
- MGHSSTIMDIQRVLLHQQSINHQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLDSMLSFIYMGETNLPSALLTEFLEAINLLGIKSAISFETNPTAMTTSNVISGAMAVEAAKSITGLHIANTTLMEEEEEEEDAHAVVGKLEVENAVLTNPQQHDHDGRTLEFLDVYGEQPKITYSIEHMGGTTSGNQYILTENTGTFTITQSASSVAKLGVQGSSTVVDSVATGELGDDDVDADVTDEHDESESQLIEEEYVGSADPLIEMTAEADVDMHEDGMQDGDDDDDDELLDVKPRKSHLDMKLLKSKARQRSTSAKASKKAMTKQHEQHAAFKKECKDNINDALDLAAAAVLHEGLSLQKAADRYDISKTVLWRRVRANPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELREKLAKAVHACINEGMTQNHAANLFEIPKSTLWRHLQRRVTDAERKVKEEQEDDDEEDALN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00512829;
- 80% Identity
- iTF_00582358;