Dpse005011.1
Basic Information
- Insect
- Drosophila pseudotalamancana
- Gene Symbol
- -
- Assembly
- GCA_037075185.1
- Location
- JBAMCK010000346.1:536160-541664[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.9e-12 1.8e-08 34.0 0.0 1 40 570 610 570 613 0.90 2 4 5.5e-14 9.8e-11 41.2 0.1 2 39 625 662 624 665 0.94 3 4 7.1e-18 1.3e-14 53.6 0.0 1 45 679 724 679 724 0.98 4 4 1.3e-19 2.3e-16 59.2 0.0 1 43 731 774 731 775 0.97
Sequence Information
- Coding Sequence
- ATGTTGCACAGTGGCTTATTGCGCACCGCGGAGCAGTTGAAAATCAAAGGACTCTGCGAGCCGGCTGAGAATGCAGATGATTTAAACGATGCGGGATCGGCGATAATAACCGTATCTGAGAACATACAGCAGGCGGTTGTTGGGAACATTGTGAATGCGAGCCTAGTGGCCAGTGCGACCTCGCCCACAAttgagcagcaacagcagcatcatcagcaacagcagcagcaacagcagcagcagcagcagcaggaacatcagcagcaggtgcaacagcagcagcagctggtgaATAGTGCGTTGCTTGCACAGCATACGATTGCCACAAACAGTGGCATACAATTGGCCAATGCGGCAGGGCAACAGCTGCTGAGCAACACAAGtggcacaagcagcagcagcagcttgcaacagttgcagcaccagcaacaacagcagcagcagcagcagcaacaacaattgcagccaACGCCGCGGAAATCACGACTGCGTAAACGTTCCAAGTCGCCAGATTTGCAGCAAACACAGtcgcaacatcagcagcaacagcagcaacagcagcaacaacaacaacagcagcagcaacaacagcagcaacaacaacaacaccatcatCATCCGCAAACGATACTCATTCAGGGACAGAATCAAACATCAATCGTTAGTCTGCAGCAAACAGCCGACGGCAATTATATaccagttgcaacaacaactggcgaCGATTCCGACAGCGATAATAAGCCGCAAAAGATCTGCAAAACAGAGCAATCGGTGGCATCGCCAACATCCAACTCGTCTACATCGAATAATGCGGCAAGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACggaaaagataaaaatatgaCTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGTTTTCTGGACTTCACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAAGCGCTCGACATAGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCAATATCTCACCATCATGCAACAGGAGACGAGAGCAACTCGAATCTGGTGCAGCATATCAAAAGCGAGGTAATTGAAGCCAAGCACTTGGCGCATGTGCaggcgcagcaacagcagcagcagcagcaacaacagcagcagcagcagcagcagcaacaacaacaacagcatcatgcacatcatcatcagcacTTGCACGCTCAGCAACTGTTGGCGCAaagtcagcaacagcaacagcagcagcagcagcagcaacaacagcagcagcagcaacatcatcagcagcagcaacagcagcagcagcatgcaGCACATGCCGCACATGCTGGGCATGCCACGCATGCTGACATCGGTGGCGCCACTGTCATGGAGATTGATCCGAGTCAGATCAAGCATGAGCCGGGCATGATTATAACTCCAGAGATTGTCAATATGATGTCTACCGGGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGGGGCACCAAATCGTGGAATGAGGATGCATTACAGAATGCCTTGGAGGCCTTGCGTTCGGGACAAATATCGGCAAATAAAGCATCGAAAGCGTTTGGTATACCGTCATCGACCCTATATAAGATAGCGCGTCGCGAGGGTATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAGTACGTCTGTTCAAAAAGCAAGTGCCGAATTCGGCATACCGACAGGAACACTTTATGGACGCTGCAAGCGGGAGGGCATCGAACTGTCGCGTTCAAATCCAACACCTTGGTCCGAGGATGCAATGAACGAGGCATTGAACTCAGTGCGCGTCGGTCAAATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGTTCGCTTTATGGACGATTTAAGCGTGGCAAATACGATGTTGTGGCCAATACAAGTGGCATATCGCTAAACAACACGTCAGGCAATACGACCGGCAGCATTGAGATTATCGAGCATAGTCAAGAAAACTCGttgcatatgttgcagcaacagttcCCGTACAGCCCTACGCCGCATCACAGTTCGCAGCAGGGACCGCCGACGCCGCAGGGCATGCAACAGCATGTGGTgcacatgcaacagcagcagtcgccgCACCAGGCACACCATCAACAACACATGCAACAGGACGTGGTAACATCGAGCAGCCAGGTGGTGCAtagccagcaacagcagcagcagcagcagcagcagcttcagcaGATCTATCAGCATCACGGAACGCCGGAGCGTAGTTGA
- Protein Sequence
- MLHSGLLRTAEQLKIKGLCEPAENADDLNDAGSAIITVSENIQQAVVGNIVNASLVASATSPTIEQQQQHHQQQQQQQQQQQQQEHQQQVQQQQQLVNSALLAQHTIATNSGIQLANAAGQQLLSNTSGTSSSSSLQQLQHQQQQQQQQQQQQLQPTPRKSRLRKRSKSPDLQQTQSQHQQQQQQQQQQQQQQQQQQQQQQQHHHHPQTILIQGQNQTSIVSLQQTADGNYIPVATTTGDDSDSDNKPQKICKTEQSVASPTSNSSTSNNAASVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQQIHRLDQSPMHSISHHHATGDESNSNLVQHIKSEVIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQQQHHAHHHQHLHAQQLLAQSQQQQQQQQQQQQQQQQQHHQQQQQQQQHAAHAAHAGHATHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGSTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGISLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPTPHHSSQQGPPTPQGMQQHVVHMQQQQSPHQAHHQQHMQQDVVTSSSQVVHSQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470787;
- 90% Identity
- -
- 80% Identity
- -