Basic Information

Insect: Drosophila pseudotakahashii
Gene Symbol: -
Assembly: GCA_035046095.1
Location: JAWNOE010000105.1:1395289-1398160[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0018 0.15 12.9 4.7 1 23 189 212 189 212 0.97

2 12 4e-06 0.00034 21.2 5.5 2 23 219 241 218 241 0.96

3 12 0.011 0.89 10.4 9.0 2 23 472 493 472 493 0.97

4 12 1.9e-06 0.00016 22.2 2.9 1 23 499 522 499 522 0.95

5 12 0.00065 0.055 14.2 0.8 1 23 527 550 527 550 0.93

6 12 6.3e-05 0.0053 17.4 5.5 1 23 568 590 568 590 0.96

7 12 8.3e-05 0.007 17.1 0.7 1 23 595 617 595 617 0.98

8 12 3.3e-05 0.0028 18.3 1.7 1 23 623 645 623 645 0.95

9 12 0.00011 0.0094 16.7 0.8 1 23 651 673 651 673 0.98

10 12 3.4e-07 2.9e-05 24.6 2.7 3 23 681 701 680 701 0.99

11 12 2.5e-08 2.1e-06 28.1 1.1 1 23 707 729 707 729 0.99

12 12 0.38 32 5.5 3.4 1 19 734 752 734 757 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0018	0.15	12.9	4.7	1	23	189	212	189	212	0.97
2	12	4e-06	0.00034	21.2	5.5	2	23	219	241	218	241	0.96
3	12	0.011	0.89	10.4	9.0	2	23	472	493	472	493	0.97
4	12	1.9e-06	0.00016	22.2	2.9	1	23	499	522	499	522	0.95
5	12	0.00065	0.055	14.2	0.8	1	23	527	550	527	550	0.93
6	12	6.3e-05	0.0053	17.4	5.5	1	23	568	590	568	590	0.96
7	12	8.3e-05	0.007	17.1	0.7	1	23	595	617	595	617	0.98
8	12	3.3e-05	0.0028	18.3	1.7	1	23	623	645	623	645	0.95
9	12	0.00011	0.0094	16.7	0.8	1	23	651	673	651	673	0.98
10	12	3.4e-07	2.9e-05	24.6	2.7	3	23	681	701	680	701	0.99
11	12	2.5e-08	2.1e-06	28.1	1.1	1	23	707	729	707	729	0.99
12	12	0.38	32	5.5	3.4	1	19	734	752	734	757	0.89

Sequence Information

Coding Sequence: ATGGCAACGCACCAGCCGCACCCGCAGCTGGAGCCGGTTTCGGGCCAGGAGCAGGAGTCGGCCAGTGAGCCGGCGGGCAGCAAGTTGGTGCTCCTCAACGCCCTGGACACCGTGGACGCGCAGCGCGTCTGTCGCGTTTGCCTGAAGGACGCCTCGCTGGACGGGGAGGTGCACTTCATCTTCAACGAGGCGCCCGTCGAGGAGGACGCCAATCTGGCCCGCATCCTGGACGAGTGCACCCAGCACCAGTGTCAGCGGCACGACGGTATGCCCCCGCATATGTGCGGCACATGCGTGGATGCGGCCCGCCACGCCTATCGTTTCAAGAGGCACGCGGAGCGCTCCTACTGCTCGCTGGTGGCCCTGCTGGGCCGCTCGCCCCAGCTGAAGGCCCGCGGAACGGAGGCGGGCAGCCAGACGGACCAGGTGGCCCTAATGCCCTGCGAGATGTGCCACGACCAGTTCCTGAACAGCCTGGAGCTTCGCCTGCATCGCAACCAGGTGCACAGGACGAACAAGGAGGGCACGACGGGCACCGGATCGGATGGCCAGCCGGCCGAGGAGTTCAAGTGCAAGTTCTGCCCGCAGCATTTCCCGCATCTCCGACAGCTGCAAAGCCATTTGGCGCGCAGCCACGAGCAGACCGCCCGGCTGCAGTGCGCCCATTGCCAGCGGACCTTCAGCCGGCGGGATCACTTGCTGCGGCACATGCGCAACCAGCACAGGGATATGGAGGATGACCTGCTGCGCACCTGGCCGCCGGCGGATGAGAGCACCATGCACAGCGACGGCGGCGATGAGCTGGTCTCCGCCGAGGTGCTGCTGAacgaggaggacgacgacgaccgTGACGGGGTCGGCGAGGCCTTCCAGTGCAATACGAATCCCATTTCTAgcaacgaggaggaggacgaagaGGCCAATGTGGCCAATCAGACGCTGTGGCTGCACATCAAGCCGGAGCCCTGCCTGGAGGCGGAGGAAGTCGACCTGGCCATGCAACTAAAGCTCGAGAAGAAGCGTCGGCGGCGAGAGAAGGCGGAAGCTCAGGCCGATGGCTCCATTGAACGGGCTGTGAAGGATGAACCCATCGCCATCGGCGACGCTCAGTTCAGCATTAAGGAGGAGAGCCACCTTGTGGGCAGCGAGGACGAGGCACCAATGGGAGTGGAGGACTTTATGAAGCTGCATGTCAGCGGAGAACTGACGCTCAGTGATGAGGATCGGTTCGATGAGTTCGTGGACGAGGATAGCGACCTGGATGACGatgaggacgacgacgaggacggTGGCGAAGACGAAGATGGGGAATTCCGGCTCAAGCAGGAGCCGCTGGACGGCGAGAAACCGTCAAAAAAGTCCAAATCCGGCAGGCGTCGGCGGCGCAACAAGGGAGAGCCGAATCCCGAAAACCGTTGCGAAGTGTGCCAGCGCACCTTCTCGCGCCACTGCCACCTGCTGCGCCACAAGCTGTCGCATTTGGAGAAGAAGCCCCACAACTGCCCGCACTGCCCCAAGGCGTTCGCGCGCAGCGACCACCTCAAGGCGCATGTGCAGAGCCTGCACAGCAACAAGGAGCACAAGTGTTCGCTCTGCGAGGCTGCCTTTTCGCGACTGGACGCCTTGGAGCGTCACAAGGTCAGCAAGCACAACGGCGAAGGCCTGGAGCCGGGCAGCGAACTGAAGCTCCAGCTGGCGGAGCACACGTGCGAGTACTGCTCGAAGCGATTCTCCAGCAAGACCTACCTGCGCAAGCACACCCTGCTCCACACCGACTTCCTTTACGCCTGCAAGACCTGCGAGGAGACATTCCGCGAGCGAGCGCAGCTTAGGGAACACGAAAAAACGCACACCGGACAGCGCAACTTCCTCTGCTGCATCTGCGGCGACAGTTTCGCCCGGAATGACTACCTCCGCGTGCACATGCGGCGCCACAACGGTGAAAAGCCCTACAAGTGCCGCTTCTGTGTCAAGGCCTTTCCCCGCGCCACCGATCTCAAGGTCCACGAGCGTTACCACACGGGCACCAAGCCGAATCTGTGCAATACTTGCGGCAAGAGCTTCCACCGGGCCTACAACCTGACCATCCACATGCGCACCCACACCGGCGAGCGGCCGTACAAGTGCGACCAGTGCCCCAAGAGCTTCACGCAGAGCAACGACCTCAAGGCGCACATCCGCAGGCATACAGGCGAGCGGTACAAGTGTCCGCACTGCGACGCCTACTTCCTGCAGCTGTACAACATGCGCAACCACTGTTTGAGCGCCCACAACAAGCACATCGAGACGAAGACGGGTCGTCTTCAGCGGACAGGCCTACTCGACGATGGTGGCCAGTCGCATCTGACCACAGTGGTCATGCCGCCGGCACGGTATCCACATGAGCTGGATCCTCAGATGGCCGCGGCTGCAGCTGCCGGGGCTGAGAGCTCATCCTCGACCACAGTCATCCACTCACCGGGCACGTACAATGCCCCATCCACCGGACTGGCGCCGGGATCAGCGTCCGCTGCTCCAGCCAGCACCCTCGATGGACCCAACTTCGCACCCACGGCGGTGAATGCGTCGGCTCCATTTGGCGCCTTCAACTTTCCGCCGGTCGTTATGGCGCATCTCATGTACAACCACGGAGGTGGCAGCCAGCACAGCCAGAGCGGAAGCGACACGGGCAAATAG
Protein Sequence: MATHQPHPQLEPVSGQEQESASEPAGSKLVLLNALDTVDAQRVCRVCLKDASLDGEVHFIFNEAPVEEDANLARILDECTQHQCQRHDGMPPHMCGTCVDAARHAYRFKRHAERSYCSLVALLGRSPQLKARGTEAGSQTDQVALMPCEMCHDQFLNSLELRLHRNQVHRTNKEGTTGTGSDGQPAEEFKCKFCPQHFPHLRQLQSHLARSHEQTARLQCAHCQRTFSRRDHLLRHMRNQHRDMEDDLLRTWPPADESTMHSDGGDELVSAEVLLNEEDDDDRDGVGEAFQCNTNPISSNEEEDEEANVANQTLWLHIKPEPCLEAEEVDLAMQLKLEKKRRRREKAEAQADGSIERAVKDEPIAIGDAQFSIKEESHLVGSEDEAPMGVEDFMKLHVSGELTLSDEDRFDEFVDEDSDLDDDEDDDEDGGEDEDGEFRLKQEPLDGEKPSKKSKSGRRRRRNKGEPNPENRCEVCQRTFSRHCHLLRHKLSHLEKKPHNCPHCPKAFARSDHLKAHVQSLHSNKEHKCSLCEAAFSRLDALERHKVSKHNGEGLEPGSELKLQLAEHTCEYCSKRFSSKTYLRKHTLLHTDFLYACKTCEETFRERAQLREHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRFCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCPHCDAYFLQLYNMRNHCLSAHNKHIETKTGRLQRTGLLDDGGQSHLTTVVMPPARYPHELDPQMAAAAAAGAESSSSTTVIHSPGTYNAPSTGLAPGSASAAPASTLDGPNFAPTAVNASAPFGAFNFPPVVMAHLMYNHGGGSQHSQSGSDTGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00504826;
90% Identity: iTF_00536918;
80% Identity: -