g16780.t1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila pseudoobscura
Gene Symbol
nfxl1
Assembly
GCA_009870125.2
Location
CM020872.1:60737829-60740861[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2 2e+04 -8.1 6.4 15 19 150 154 149 154 0.82
2 20 0.13 1.3e+03 -0.3 0.4 4 10 185 191 184 191 0.95
3 20 6.5e-08 0.00065 19.8 15.5 1 18 199 215 199 216 0.98
4 20 0.73 7.3e+03 -2.7 1.8 5 10 241 246 241 246 0.93
5 20 9.4e-09 9.4e-05 22.5 15.9 1 19 252 271 252 271 0.98
6 20 1.8 1.8e+04 -4.0 0.9 5 10 295 300 295 300 0.91
7 20 2.6e-08 0.00026 21.1 15.0 1 19 306 326 306 333 0.95
8 20 0.89 8.9e+03 -3.0 0.5 1 7 350 355 349 357 0.49
9 20 1.3e-07 0.0013 18.9 14.0 1 19 360 378 360 378 0.99
10 20 0.26 2.6e+03 -1.3 5.1 3 10 399 406 387 406 0.86
11 20 0.00036 3.6 7.9 17.2 1 18 412 429 412 430 0.97
12 20 3.4e-08 0.00034 20.7 14.7 1 19 439 457 433 457 0.90
13 20 0.00016 1.6 9.0 8.6 9 18 502 511 500 512 0.91
14 20 0.014 1.4e+02 2.8 6.6 1 12 524 534 524 534 0.96
15 20 0.86 8.7e+03 -2.9 1.4 6 10 589 593 588 593 0.88
16 20 3.8e-06 0.038 14.2 5.7 1 12 599 610 599 610 0.97
17 20 1.6 1.6e+04 -3.8 0.8 5 10 625 630 625 630 0.87
18 20 0.48 4.8e+03 -2.1 18.1 4 18 640 654 638 655 0.92
19 20 1.7 1.7e+04 -3.9 1.6 8 13 660 665 659 665 0.74
20 20 6.4e-06 0.064 13.4 9.0 2 17 707 721 706 725 0.90

Sequence Information

Coding Sequence
ATGTGCAACGTtgcaaaagtggaaaaaattGCCCAGAAACTTGTATACGCCTACGCTTCCAGCTCTGAAGATGAGGGGGAACTGgatgaaaaacaaattttggATCAATTATACAAGCACTACCAACCGACGTCCGGTAGGTCTAGTGGAAAGCCGGGAAGTGACAAAGATGTCGCCCGCACTACTACCTTCCTGGAAAACACCCTCCACTCTGGAGCGGCCACTTGCCTCATCTGCATTGGCAGCATTCGACGTGTGGAGCCGATATGGTCCTGTGAGAGCTGTTATTGCTTCTTCCACCTCAATTGCATTCAGCGGTGGGCCAATGACAGCATGATGCAGATGAAAGTAAGGGCGGAGCAGCAGAATGGGAACCAGAATCAGGGCCACTACAATCATTTGGGGGAGTTTGTGCCGCCCAAGCGCCAGAAATCGCTGCACTGGTGCTGTCCCCAGTGCCGAATGGACTACcagccggcggagaaaccAACGCAATACAACTGTTTCTGCGGCAAGGAAGAGAATCCGCAGTCGCAGCCGTTCCTAGTACCGCATtcgtgtggcgaaatttgtaAGAAGCTACTCCAGCCAAAGTGCGGTCACGATTGTAAGCTCCTTTGTCATCCGGGGCCGTGTCCGCCCTGTGCTCAGCAGGCGCAAGTCTCCTGCCTGTGTGGGAAATCCACTCCGCGCTCCATGCGCTGCATAGACAAGCAATGGAAGTGCCAGCAAGCGTGCAAAGAGCTCTTGGCCTGTGGGAAGCACAGATGCAGCCAAGTATGCCATCGACCAGGACAGTGTCCGCCttgcagcagcaagagcaaccAGCCATGCGAGTGCAAGCGAGAGTCGAAGGTCGTAAGCTGCTCTGATCGCAAGTGGAAGTGCACAAATATTTGTGGAGCGACGTTCGCCTGTGGCTTGCACACCTGTGAAAAGGTGTGTCATGCCGGACCCTGCGGTGGTGGAGAGTGTCCCTTGGAAGTGAAGACATGTCCCTGtggaaaaaatAGCCAAATGCGGCCCTGCAACGAGGCTGTGGAAACCTGTGGCGATACTTGTCAGAAGCTCTTATCCTGCGGTCAGCATTCATGCACTCAGCGCTGTCATCGTGGCAACTGCATTTCGTGCCCAGTGAGGACAAAGAAGAAATGCCGCTGCGGCCTTCATGAGAAGGAGCTGCCCTGCTCCAAGGAGCACACCTGCGAGACCAAGTGCAAGCAAATGCGTGACTGTGGCAAGCATGCCTGCAACAGAAAGTGCTGCGGCGATCAGTGCCCGCCCTGCGAAAAGATCTGTGGCAAGCAGTTGAGCTGCAACAAGCACAAGTGCCAGTCCGTGTGCCACAACGGGCCCTGCTATCCCTGCAAACTGGAGTCCCAGATCAACTGCCGCTGCGGCAAGACGCGGCGCAGTGTGCCCTGCGGGCGAGAGAAGAGTGCGCGCATCGTCTGCTTGGAGCTTTGTCGTATATCTGCGAAATGCCATCATGCCATTAAACATCGCTGCCACAAAGGTGAGTGTCCGCCATGTGGCCAGGTATGTGCTCTTCCAAATTCCGACAGCGGCTGTGGACACATCTGCAAGGCGCGTTGTCACGAGGCCGTCAGAGTGAACCGGCCTGCTGATGCGGCCCGCCCTCAAACCAAAAAGTATGAATACAAATCACTGCCACATCCACGCTGCGAGGAGAGCGTCAGCGTCACCTGCATTGGAGGCCACGAGGTAGCCACTTGGCCCTGCTGGAACTCAAAGCCCACTTCTTGCCAGCGCAAATGCTCGCGGAAGCTCAACTGTGGCAATCACAAATGCTCCCTCGTCTGTCATTCTGTGTCCAATCCGCAAGatatgcagcagcaggctggCTGTGCCACATGCGAGGAGGGTTGCATCATTCCTCGTCCAACGGGTTGCGCACACGCCTGTCCCAAAGGCTGCCATCCGCCGCCGTGCACTCCATGCGGCTTTGTGATCAAGAGCAAGTGCCATTGCGGACTCACGCAGTTGGTGTACAAGTGCAGCGAGTACTTCGATGAGGCAGGCACTGTCCAGGAGATAATCGATCGGAGGGAGAGATTCCGCAGTTGCGGCAATCGCTGCTTAAAGAACTATCCCTGCGCACATCGATGCATGTCGATATGCCACTCTGGCAAGTGCCCTAGTCCCGATCTGTGTCGCAAGAAGGTTCGCATTTTCTGTGCCTGCAAGAGACTCAAGCAGGAGATCGCTTGCGACAAGCATCGGGCTGGGCAAACGTCGCTTGAGTGCGACTCTAGCTGTGTGGCCGAACTCTCCCGTGCTCAGGcggcggagcagcagcatttggAGCAAAAGCGCCGCAATGAGGAGGAACGTAATCGACTGGAACTGGAGAAGTTTGAACAGAAATTCGGAAAACGCAAGCACAGAGAACGCAAAACTCTAGATGTGGGCCCGCCCAAATCGAAAATGAATTGGGAACAAACGGCCATTTATGTAGCGTCGGTAATGATTGTTCTGGGAGCCATTGCGGTGGCAACCTATGCGGACAGTTAA
Protein Sequence
MCNVAKVEKIAQKLVYAYASSSEDEGELDEKQILDQLYKHYQPTSGRSSGKPGSDKDVARTTTFLENTLHSGAATCLICIGSIRRVEPIWSCESCYCFFHLNCIQRWANDSMMQMKVRAEQQNGNQNQGHYNHLGEFVPPKRQKSLHWCCPQCRMDYQPAEKPTQYNCFCGKEENPQSQPFLVPHSCGEICKKLLQPKCGHDCKLLCHPGPCPPCAQQAQVSCLCGKSTPRSMRCIDKQWKCQQACKELLACGKHRCSQVCHRPGQCPPCSSKSNQPCECKRESKVVSCSDRKWKCTNICGATFACGLHTCEKVCHAGPCGGGECPLEVKTCPCGKNSQMRPCNEAVETCGDTCQKLLSCGQHSCTQRCHRGNCISCPVRTKKKCRCGLHEKELPCSKEHTCETKCKQMRDCGKHACNRKCCGDQCPPCEKICGKQLSCNKHKCQSVCHNGPCYPCKLESQINCRCGKTRRSVPCGREKSARIVCLELCRISAKCHHAIKHRCHKGECPPCGQVCALPNSDSGCGHICKARCHEAVRVNRPADAARPQTKKYEYKSLPHPRCEESVSVTCIGGHEVATWPCWNSKPTSCQRKCSRKLNCGNHKCSLVCHSVSNPQDMQQQAGCATCEEGCIIPRPTGCAHACPKGCHPPPCTPCGFVIKSKCHCGLTQLVYKCSEYFDEAGTVQEIIDRRERFRSCGNRCLKNYPCAHRCMSICHSGKCPSPDLCRKKVRIFCACKRLKQEIACDKHRAGQTSLECDSSCVAELSRAQAAEQQHLEQKRRNEEERNRLELEKFEQKFGKRKHRERKTLDVGPPKSKMNWEQTAIYVASVMIVLGAIAVATYADS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00603756;
90% Identity
iTF_00487690;
80% Identity
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