g16108.t1
Basic Information
- Insect
- Drosophila pseudoobscura
- Gene Symbol
- Aef1
- Assembly
- GCA_009870125.2
- Location
- CM020872.1:55537812-55538897[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0087 58 4.1 0.1 21 46 198 223 193 225 0.87 2 4 2.6e-05 0.17 12.2 0.0 21 52 226 257 223 258 0.89 3 4 0.024 1.6e+02 2.6 0.1 21 48 254 281 252 285 0.86 4 4 8.6e-05 0.57 10.5 0.1 21 47 282 308 280 315 0.88
Sequence Information
- Coding Sequence
- ATGATGCATATCAAGAGCTTGCCCCATGCTCATGCCCATGCTGCTGCCACGGCGATGAGCAGCAACTGTGACATTGTTATTGTGGCCTCTCAGCCGCAGACGACGattgccaacaacaacaacaatgataCGGTCACACAGGCCACTCATCCCGGTcatgtggcagcggcggcccaacagcagcagcaacagcagcagcaccaccaacagcaacaggcgcagcagcaacaggcgcagcagcaacaagcgcagcagcaacagtcctCTGGACCACCATCAgcgcctccagctccagcggaACTTGCCTTACCCTTCCAAATGCATCTGACTGGGATTTCGGCCGAGGCGCATAGTGCCGCTCAGGCTGCAGCAATGGCGGCTGCCCAGGCCGCGGCGGCtcaggcggcagcggcagaccagcagcagccaccgccgccgcctccgccgcatCTTGTCCACCTGGCCACACACAGCCCGACCATGTCGAATGATCACTATTTAGCCAATGGCCATGGCGAGCACCAGGGCGAGGGGACTGGCAGTAATGCCAACtctggcggtggcgggggcggaggcggaggagcgAGAGACCAGGAAAAGCCCTTCCACTGCACCGTGTGCGATAGACGCTTCCGGCAGCTGAGCACACTGACCAACCATGTCAAGATCCACACTGGCGAGAAGCCCTACAAATGCAACGTTTGTGATAAGACCTTCCGTCAATCGTCCACGCTGACGAACCATCTGAAGATCCATACGGGGGAAAAGCCCTACAACTGCAACTACTGTCCCAAGCATTTCCGTCAGCTGAGCACTCTGGCGAATCATATCAAGATCCACACGGGTGAAAAGCCGTTCGAGTGCGTCATATGCAAAAAGCAATTCCGGCAGTCCAGCACGCTCAACAACCACATAAAGATCCATGTCATGGACAAGGTCTACGTTCCTGTCAAGATCAaaacggaggaggaggaggggtgA
- Protein Sequence
- MMHIKSLPHAHAHAAATAMSSNCDIVIVASQPQTTIANNNNNDTVTQATHPGHVAAAAQQQQQQQQHHQQQQAQQQQAQQQQAQQQQSSGPPSAPPAPAELALPFQMHLTGISAEAHSAAQAAAMAAAQAAAAQAAAADQQQPPPPPPPHLVHLATHSPTMSNDHYLANGHGEHQGEGTGSNANSGGGGGGGGGARDQEKPFHCTVCDRRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPYNCNYCPKHFRQLSTLANHIKIHTGEKPFECVICKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00581008; iTF_00504917; iTF_00517948; iTF_00518103; iTF_00474021; iTF_00472025; iTF_00471866; iTF_00474173;
- 90% Identity
- iTF_00517948;
- 80% Identity
- iTF_00581008;