g1522.t1
Basic Information
- Insect
- Drosophila pseudoobscura
- Gene Symbol
- -
- Assembly
- GCA_009870125.2
- Location
- CM020868.1:11978606-11984495[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0099 0.75 10.5 0.3 1 23 1328 1351 1328 1351 0.95 2 13 8 6.1e+02 1.4 0.2 1 23 1514 1536 1514 1536 0.91 3 13 0.00018 0.014 16.0 2.7 2 23 1539 1560 1539 1560 0.97 4 13 6.9e-05 0.0052 17.3 0.2 3 23 1568 1588 1566 1588 0.98 5 13 5.7e-07 4.3e-05 23.9 4.1 2 23 1595 1616 1594 1616 0.97 6 13 5.4 4.1e+02 1.9 0.4 5 23 1629 1647 1627 1647 0.96 7 13 1.3 1e+02 3.8 5.4 3 23 1654 1675 1652 1675 0.93 8 13 0.14 11 6.9 0.2 2 23 1686 1706 1685 1706 0.96 9 13 5.5e-05 0.0042 17.6 0.4 1 19 1712 1730 1712 1734 0.95 10 13 3.5e-05 0.0026 18.3 0.4 1 23 1742 1764 1742 1764 0.98 11 13 0.0001 0.0078 16.8 7.6 1 23 1770 1792 1770 1793 0.96 12 13 0.00022 0.017 15.7 6.5 1 23 1798 1820 1798 1820 0.98 13 13 0.0027 0.2 12.3 6.1 1 23 1826 1848 1826 1849 0.96
Sequence Information
- Coding Sequence
- ATGGTCGACAGCGTGCAGTGCCCCGTGTGCACCTTGTACCTGCATGCGGGTATGAACCTCTCCGACCATCTGGAGACGCATCCCAAGGAGCAGGTCATCAAGGCGCTGGTGCAGATGACAATTGTGGGCAACACTGGCATGGGCAATGCCCTGGCGGCGGCCATGCTGGGCGATGgctcatcagcagcagcgggaggtGGTGCAGATGCTGCCGGTGGCTCCGACgacaccgccgccaccgcctcgaCGTCGTCTCCAACTGTGGCTGATGTTAAGCCAGTTGTTGTGTCCGCCAGCTCATCGATAGCCTCTAATGCGCCGCCGCCCCTCTCCTCCTCACTAActtccccctcccactcccactcctcctcctccgttgctgccacagcgaacagcagcagcagcagcagcagcaaattgaGCAATCCACCGATGAAAGCACTGAAATGCGCACCGCCCACGACTGAGGCGCGAGCCAACAACACATCCGCACCCACCACAAACAGCGCCATGGCCGCACTGTACCAGCCACCGCTGGTCACCACGGACTATCGCTACACtaatcaacagcagcagcagcagcaacaacaaccacaacagcagACGAGCTTTGGGCGTGGTgccaccaccgccacagccaccgccaccgccactttGGTAATACCGCAGGTGCCACAGCAGCACTTCCTCGCCAGcagccatcagcagcagcagcagcagcagacccaCTTTgcccatcagcagcaacagcatcctGGCCTGAAATTTACCTACGCCACCACGCTGCCGCCCCCTCCGCCGCTGCAGCTCttcacgcagcagcagcagcaacagcagcagcagacaggaGCACAACCGCACCAGAAACCTCCTCCCGCCTATGGAGCCGCCATCAGTCAAATACGATCTCAGCACAACcaaaacaagcagcagcaccagcaacaccagcaacagcagcagcagcaacatgtgACCGTTCATCATAACGTTACCCTGGCACCACCGACGaccacaacagcagccgctggAGGAAAGCATAGCGGCAAAGCACACACGGAAGTATTCCTGAAtcccccaccaccgccgctgccaccgcagGCGCAcgggcagcaccagcagcatcatcaccatccgcaacaacagcagcagcagcaggcacagcagTCCGCGATGCCAGTGGCCCTAACAACGGGTGCCAccagacagcaacagcagccggtGACCTTGCAGACCTACGGATCGAGTGTGGGAAGCTGCAGCTCTTCCTCCCTGCCCGCCATATCGACGGCTGGTCGAACGAGCCGCCAGACCAACTCTCCCTTCGGGGCATTGCTCaatgctgcggcggctgcggccaGCTCCTCGCCCTCGTCCGCATCGGCCGCCTCGGTGCTGCGCTACGCGGAGTCGCCGGTGGCCCATTATCTGGAGCGGGAGAACGGGGACTTCATTGTCCAGGAGACGCCCAAGCACATTGTGGAGTGCGTCGAGAAGGAGGACGGGGAGTTCTCCGTGATCGAGCGCATTTACCAGTCGCCTCCGAGTGTGCTCCACAtacacgacgacgacgaggacgacgacgacgacgacgacgatgaagaggaggaggaggagaacgagACGGCCCTGCAGGACGAGCACGAACATGTGGAGGATGGGGACGATGAGCGGGACGAGAACAGCCGCTGCCGGAACTTGACCAAAACAACGAAGAAGTCGCGCAAGACAAAGCCCAAGCGACCCTCAAAGAAGAGCCCCCGGCAACACCACTCGGACGAAGAGTTCATGAgcatcagcagcggctgcgAGAGCgactccgagtccgagtccgataCGAAGGTGGAGGTCCAGGCGGTGGCGCTACCCCCTCTGTGCACGGCCCCCTCCACGAGCAGTGCCGCGGCGGCCGCCGCAGTGGCCTCCGCGTCCACCCTAGCAGACGGCCATTCGAACTCCACCTCGAACTCCAATTCGAACTCAAACACCAAGTCCAAGAAGAACCGCATCACAGTGCTCAGCGATGTGCCGCTCAACATGAACGAGTACCTCGATCTGATGGGCAACATCGTGGCCTCCAGCCGCATCGGCACCTCTCGCCCGTTTGCCGCCGTGGCGCCCATACCACTGGTCAAGGTCGAGAAGGAGGAGCCCATAGATGAGTACGACAATTCGGGGCATTCGGATGCGACGGATCCCATGCTGCTGATGGATCACAAGCCCAGCCTGGAGCAGAGCTGTGGCGGAGGACATGGCACCACCAGCGTCATCCGCATGGCCAGCGGCATGTCGGCGGCCACGGAGGACTTCACCCAGCCGCCGCCCATGAAGGTCGAGGTCGAGCCAACGACGCTGCTACCTCAGCGGTTCTCGACTCCTGCCCAGCTTCGTGGACCCAAGAAATTAGTCATCAAACCAAAGGCCacggcaacgacgacgacggcggcgacggcgacaacaaaacaaaagactgaCACCCCATCTTCCTCGAGCGCGGATCCGCTGCTGCCCtcaacatcaacatccacCTGCAACTCCCTATCCATATCAAAATCCGGCACGGAGCTGGTCCACATCAAGAGCGAGATCACGGAGATGCCGTCGAGCAGCATCCTCGAGAAGCATCTGACCACACGGAAGCACTCGACGGTGAACGACGACGATGCTCGCGTGCTGCTGGAGTTTGCCAATTCGAAGCAGCCGGCGACGCTCGCAGGCACCGCCTCCAGCACCACCTTTGTGGTGAATGCCAATTCGGGCTTCCCCTCAGCGGGCTCCGTGTTTGCCAGCAGCACAGCGCACAGCAGCACGGGCCAGAAGACGGGCCAAGCCAAGCCGGGCGAGGAGTACATTCTGCCGGACAACAATCTGGAGGTGGACGAAATTGTGAtatcctcctcgtcctcctacGCCTCATCCGTGGCGCAGGTCCATccgtcgctgccgctgtcgctccAGCCGCCCGCAGCGGCCGCATCCATTAACGACTTCAATTTCCTATACCAGCAGACCACGAGCACGGCCACGACGTCCGCCAACTGCGCCTACTTCACGCCCTTCGCCCttcgacaacaacagcagcagcagcaacagacgcAGCACGGAGTCAGCGATGCCACGAATGCAGCCACCTTGGCCTCCTCTTCCAGCAATTCCTCGGCGATGGATCACGACTCGATGAACGCCACCTTTCGGGTGGCCAAGACGCAGTCGCTTCAGTCCTGGTATCAGCTAGATCAAGACCACGATCCACAGCATGAGTCTGCAgtagcagccgctgccgcagcagcatcgggcacgggagcgggagcgggagcctCCTCTTCCAGCCAAAACCAGAACCATGAAGGCGCCCAGCCCACCAACTTCAATGCCGCGTTGGCTGCCGTCGATTGCTGCAGTGTGGCCGTCGATGGCGATGTCAAGTATCTGGATCTGGACGCGTGCAAGCGGGAGCagctgagcagcagcagcaatctgCCATCGGCATCCGCCTCCACATCGACAACATCCTCATCGTTCGCTGGGGCGGCCACGGAGAGCAGCCTCGTGGGGGGCCTCAACATACGCACCGATGAGAAAATGCCCGCCAAGGGCGAAATCTCAGAGCAGGAGAGCAACTGCGACATCGAGAACTCGTGGAGTCAGTCGGTGTACGGCGACATATCACAGCGATACTTTAGGAATCAGTTCACTGGCGGCTACAACCCCGACTGGCGGCAGGACTACTATCCGGTGCAGGATCTCAGCGGCCAGCAGCGGGAGCACAAGCGATTCGATTTTAATGCTGTCGACGAGGAGGCCTCATCCAGCTCCAGAAAGAGTCATCTAATTGATGAGCAGCCGGCAGCCACCACTTCCTCAGCGTCTTCGGCATTGCTGGCTGGTCCACCAATCGCTTCAACGTCCAGGGCTGCCGCTgaggcggcggaggcggcagCTTCGGCCGCTTTGGCGCAGCGCAAGCCGCAGCGTCGCAAGCTCTACAAGTGTCCGCATTGCGAGGCCATCTTCGAGAAGCTCAAGGACCGGAATGCGCACATGATTGGCGAGCACAACTATGTGCGTCAGAATCGACGCCTGATTTGCACGCAGCCGCAGATTAGCGCCCCGATGCTACCGCCACCCCCgtcccagcagcaacagcaccagcagctgctCATGCACgcgggcgtgggcgtgggcaaCGGCGGCGATGAAGCCATGCATGAGGATTCCAAAGATGGCATTGTCAAGATCAAGCAGGAACAGTGCCAGGACAGGCCGGATGTGGAGCAGATCGAGACCAGCCCCGAGCTACTGACCGATGTCAAGGATGCCGAGCTGCTGGGCattggcgatggcgatgcggatggggatggTGATATCAAGCCGCCCAGCCAGCTGGACCACAAAATGACCCTCCCGCCACTGGCGATGACCACGCCGGCCGCCAAATTGGCGGCCCTATATCGAATGCTTATTTCCTACAACGAGTCCAAGCTGGGACAGGAGCGCAACAACCTCAACGAGCTGGAGCAGAAGGCGATGGAGAAGTCCATCTTCCTGTGCTATGTCTGCCGCACCGACTTCCCCTCCGTTAAGCTCTACGATGCGCATCTCACGGAGCATCCCGCCGAGTGCTTCACCTGTGGCAAGAAATTCTATAGGTGGAAGAACTTCTCCCTGCATCTGAAGCGCCACTTGGGCTGGAAGGAGTTCGGCTGCTATGTCTGCGACAAGAAGTTTGTCGTGCGCAGCGCTCTCGTGGAGCACATGCGGATGCACACGGGCCAGACGCCGCTCAAGTGCAAGATATGCGGCAAAAAGTTTAAGCGGTACTCGAATTTGACGCAGCACCGCAAGCGTCACACAAAGGTGATGGTGCGCAAGAAGGAGTACGTGTGTCACTGCGGCGAGGTGCTGCCGTCGAAGGCGCGCTTTCTCTGGCACAAGGAGACGCACGATGTGAAGCCCAAGTGCTGCCCGTACTGCTGCGATCGATTCGTGCACGCCAACTCGCTGCGCCGCCACATACGGCTGGCTCACTCGGATAAGTTTGACTACGCCGAGCCGATGGAGTGCCCCATGTGCAAGCAGATCTTTGCCAAGACCTCGATCAAGGCGCACATGGCCACGCACTCGACTGATCCGCAGTACGACTGCGCCATCTGCAACAAGAGCTTCTCCACCAAATGGAATCTCAAGATACACTCGTGGGTGCACGCCAATCGGACGGCGAAACCGTTCAAGTGCGAGTACTGCCCAAAGGCGTTTGTGCGAGAGCTGGACTTCAAGAACCACATCAACGCACACAAGCAGATCAAGCCGTACACCTGCGAGTACTGCGGCTGCAAGTTCATACGAAAGTACAACTACATGCGGCACCGACGCGAGCACCACGGCACCAAGAAGTTCACCTGCGACCAGTGCGACAAGTCATTCCATCGGCACTACTATCTGATCGAGCACCGGCGCATGCACACCGGCGAGCGACCCTTCACTTGCACCATATGCGGCAAGAGCTCCACCACCAAGACCAATCACAACAAGCATCTGAAAATCCATCACTCGCGTGATCCCTTCACCGTGGAGGTCTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGNTGMGNALAAAMLGDGSSAAAGGGADAAGGSDDTAATASTSSPTVADVKPVVVSASSSIASNAPPPLSSSLTSPSHSHSSSSVAATANSSSSSSSKLSNPPMKALKCAPPTTEARANNTSAPTTNSAMAALYQPPLVTTDYRYTNQQQQQQQQQPQQQTSFGRGATTATATATATLVIPQVPQQHFLASSHQQQQQQQTHFAHQQQQHPGLKFTYATTLPPPPPLQLFTQQQQQQQQQTGAQPHQKPPPAYGAAISQIRSQHNQNKQQHQQHQQQQQQQHVTVHHNVTLAPPTTTTAAAGGKHSGKAHTEVFLNPPPPPLPPQAHGQHQQHHHHPQQQQQQQAQQSAMPVALTTGATRQQQQPVTLQTYGSSVGSCSSSSLPAISTAGRTSRQTNSPFGALLNAAAAAASSSPSSASAASVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDEDDDDDDDDEEEEEENETALQDEHEHVEDGDDERDENSRCRNLTKTTKKSRKTKPKRPSKKSPRQHHSDEEFMSISSGCESDSESESDTKVEVQAVALPPLCTAPSTSSAAAAAAVASASTLADGHSNSTSNSNSNSNTKSKKNRITVLSDVPLNMNEYLDLMGNIVASSRIGTSRPFAAVAPIPLVKVEKEEPIDEYDNSGHSDATDPMLLMDHKPSLEQSCGGGHGTTSVIRMASGMSAATEDFTQPPPMKVEVEPTTLLPQRFSTPAQLRGPKKLVIKPKATATTTTAATATTKQKTDTPSSSSADPLLPSTSTSTCNSLSISKSGTELVHIKSEITEMPSSSILEKHLTTRKHSTVNDDDARVLLEFANSKQPATLAGTASSTTFVVNANSGFPSAGSVFASSTAHSSTGQKTGQAKPGEEYILPDNNLEVDEIVISSSSSYASSVAQVHPSLPLSLQPPAAAASINDFNFLYQQTTSTATTSANCAYFTPFALRQQQQQQQQTQHGVSDATNAATLASSSSNSSAMDHDSMNATFRVAKTQSLQSWYQLDQDHDPQHESAVAAAAAAASGTGAGAGASSSSQNQNHEGAQPTNFNAALAAVDCCSVAVDGDVKYLDLDACKREQLSSSSNLPSASASTSTTSSSFAGAATESSLVGGLNIRTDEKMPAKGEISEQESNCDIENSWSQSVYGDISQRYFRNQFTGGYNPDWRQDYYPVQDLSGQQREHKRFDFNAVDEEASSSSRKSHLIDEQPAATTSSASSALLAGPPIASTSRAAAEAAEAAASAALAQRKPQRRKLYKCPHCEAIFEKLKDRNAHMIGEHNYVRQNRRLICTQPQISAPMLPPPPSQQQQHQQLLMHAGVGVGNGGDEAMHEDSKDGIVKIKQEQCQDRPDVEQIETSPELLTDVKDAELLGIGDGDADGDGDIKPPSQLDHKMTLPPLAMTTPAAKLAALYRMLISYNESKLGQERNNLNELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKVMVRKKEYVCHCGEVLPSKARFLWHKETHDVKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHINAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGTKKFTCDQCDKSFHRHYYLIEHRRMHTGERPFTCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00471815;
- 90% Identity
- -
- 80% Identity
- -