g6492.t4
Basic Information
- Insect
- Drosophila pseudoobscura
- Gene Symbol
- -
- Assembly
- GCA_009870125.2
- Location
- CM020869.1:20030911-20037988[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00024 0.018 15.6 3.4 1 23 275 297 275 297 0.98 2 11 0.0012 0.094 13.4 10.4 1 23 303 325 303 325 0.96 3 11 0.00012 0.009 16.6 6.5 1 23 331 353 331 353 0.98 4 11 0.00054 0.041 14.5 1.6 1 23 359 381 359 381 0.95 5 11 2.6e-05 0.002 18.7 0.5 1 23 387 409 387 409 0.97 6 11 2.5e-05 0.0019 18.7 0.1 1 23 415 437 415 437 0.98 7 11 0.00015 0.011 16.3 2.0 1 23 442 465 442 465 0.97 8 11 0.061 4.6 8.1 0.3 1 23 471 494 471 494 0.94 9 11 0.00019 0.015 15.9 0.1 1 23 554 576 554 576 0.98 10 11 0.018 1.3 9.7 2.7 1 23 693 715 693 715 0.95 11 11 0.0052 0.39 11.4 4.9 5 23 728 746 720 746 0.92
Sequence Information
- Coding Sequence
- ATGTGCGCCGCCCAGAACCCACAGCCGCCCTTCGGCTACACCTGGGGCTTCGCAGACAACGGCAGCCGCACCGCCGAATCGGTTCTGGAAATATCGCCCAACATAAACTACACCGTCAGTGGGGAATCGATGCCCTATCTGCTGTCCACGGATGGATCATTGGCCGTACAAAAGGATGTCAAAGGTGCTCTAACCGGCAATAAGGGGAATGTTGTGCGTCGCATGTACGTTGTGAACGATCCTTCGTTTCCGCCCGGTACACAGAGAGTAATAACCACTGGGGGAGGCTCGTCGGTAGTCAAGAAACAGGATTCGCAGCAGCAGGTGCTGAGCCTGGACAAGAACTATCTCCTGGTTGATCAGGCaactgccgcagcagcagcagccgcggcTGCCGGGGATCCCTCGGTTGCCCACCACCACACATTGACCAACGGTAGTATTGTCGATGCTAAGACCGGACAGACGGTGCTGACGGCGGGCTCCGCGGCTGCAAAGTCGCACTTTGGGTCAATTGGGGCGCTGCACCTCACCCAAGAGGAGTGCAACGAGATCCTGATTAAGCGCGCCATCGCTGCCGGCCACCATCAGACGCACACAATCACCGCTGCCGACGGATCGCATCATCATAGCTCGGCGTCTGGCGCGACACCAATTCAAGTCCAGAAAGTAATACAAGGACTCGAAGAGAACGAGGACTCGCAGGGCGACGCACCCAACTTAAAGTTGGAGCCAGGCACATTAGAGTTGTCCCCAAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACGGACGCCACCATCAAGAAGGAACGCCCGTACAGTTGTGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCATCATTTGACAACACACGCACGCGTGCACACAGGTGAGCGACCCCATATCTGTTCCCATTGCGGCAAGAGCTTTGCGCACAAACACTGTCTGAACACGCATCTACTGCTGCATTCAACCGACCGACCCTACCAGTGCCAGGAGTGCAAGAAGAGCTTCACCCTTAAGCATCATCTGTTGACGCACTCGCGCGTCCACAGCCGAGAACGACCCTTCGTGTGCCAGGAGTGCGGACGTGCCTTCCCACTCAAGCGGCACCTGGTCACGCACAGCAAATTCCACGCCGGCGAACGTCCATACGTCTGCGAGGAATGCGGTGAGAGCTTTGCCCAGGAAAACCATCTTATTATGCACTCGCGCTTCCATGGTTCATTGAATCCATTTGTTTGCGCTGAGTGCGGTGCCTCGTTTCCACGCAAGTTCCAGTTGGTGAATCACGGACGCATACACGGCAAGATTCCCCACTCCTGCACCGTTTGCGGAAAAGAGTTTTTACAGAAGCGAACGCTAGTTTCCCACATGAGACGTGTACACACCGGCGAGCAGGCGCATCCCTGCGTCAGCTGCGGCGAGGGATTCCTCACCAAGGCTGAGCTGCACCAGCACGTGCGGGCAGCGCACAATGGCGTCAATCCCAACACGAGCAGTGCCACCATCATTGCCAACCAACAGcagctgcaacagcccCACCACCATCCGGGACAGCATCCGCAGACGATCACCGTCGTGAGTAACCCGGGCAACTCTACGCTTCTAACGGTCTCCACCACGGATGCCAATGGTGTGGCGCGTCCGCAGTTCGTTTGCCGCGAGTGCGGCAGCGCCTTCAACAGCCGCGAGGCCTTGGCTCTGCATTTGCGACTGCACACCGGCGATAAGAGTCTGATGACCGATTTGTGCGCCTTGACAGCAGCGCTGCCGGGTCACTTCTTGAGTACGGCCAGCCTGAACCCGGGCACTGTGGTGACAGCCAATCCGAATTTGGTGGGCCAGAACCCAGTGCCCGTGCAGATCATATCGTCCACCGGCCAGGTTATGTCGCAGACTACGCTGGTGCAGGCCGCCAACTCGACCCATCCGCAGGCCGTAGTCACTGCCGTGCCAACGATGCCCGTtcatcagcaacagcacatgcaacatgttgcccagcaacaacaacagcagcagcagcaacagcacgtGGTCAATGTGGTGCCGGCCAATAAGCCCAAGTCGCATTTCTGCGCCAGCTGTGGCAAGGGATTCGCCGCCAAACACGGCCTCATGCAGCACAACCGCCGCCACCCGAACGGCGGCTGTACGGTGCGCACTCACGTCTGCGAGTGCGGAAAGGCCTTCTTCCAGAAGAACCATCTAATGCTGCACCAGCGCCAGCACTTGGAGACGAAGCCAGCCATATCACAGCAACAGgagcagcaacaacaggaggCGGCCGTGGCAGCGTCAGCGTCTGGACAGCAACCGGTGCAGGTGCAGATCCTGCCCGATGGCCACATACACGGCAAGGTCATCAAGTACGAGATCTGCCGCAGTGTGCTGCCAGAGGATCAGGCCAcagcacagcaacagcagcaggcaggcatgGATGTGGAGTAG
- Protein Sequence
- MCAAQNPQPPFGYTWGFADNGSRTAESVLEISPNINYTVSGESMPYLLSTDGSLAVQKDVKGALTGNKGNVVRRMYVVNDPSFPPGTQRVITTGGGSSVVKKQDSQQQVLSLDKNYLLVDQATAAAAAAAAAGDPSVAHHHTLTNGSIVDAKTGQTVLTAGSAAAKSHFGSIGALHLTQEECNEILIKRAIAAGHHQTHTITAADGSHHHSSASGATPIQVQKVIQGLEENEDSQGDAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGERPHICSHCGKSFAHKHCLNTHLLLHSTDRPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCAECGASFPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRAAHNGVNPNTSSATIIANQQQLQQPHHHPGQHPQTITVVSNPGNSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVGQNPVPVQIISSTGQVMSQTTLVQAANSTHPQAVVTAVPTMPVHQQQHMQHVAQQQQQQQQQQHVVNVVPANKPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQEQQQQEAAVAASASGQQPVQVQILPDGHIHGKVIKYEICRSVLPEDQATAQQQQQAGMDVE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00481685;
- 90% Identity
- iTF_00603515;
- 80% Identity
- -