g404.t1
Basic Information
- Insect
- Drosophila pseudoobscura
- Gene Symbol
- Trerf1
- Assembly
- GCA_009870125.2
- Location
- CM020868.1:2640470-2653589[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-09 3.1e-06 27.3 0.1 2 45 1752 1795 1751 1796 0.94
Sequence Information
- Coding Sequence
- ATGGCAGCCATAAATACGGTACCAAAGAGCATACACCTGCCTTTGACAAGTCTCAGCAGCGCGCCGCGCGTGTTGATGTGCAGCGCCTCTGTGGGCTCTGAGGGATCCGTAACGTTGCAACTGAGAGATGCTAGCGCCTTGGAGGCAGCAACatcggcagcaacagcagcaacagcaacagcaacagcgagcACGAAATCTGCCACATCAACAGGGGGGAATGGCGTTACAACGCTTGCCACGTCCTCAACGTCGGCACTAGAGAATGCTTTGACGATCGGGTATCCGGATCCGGAAATGCTGGCAGATGTCTTGGGCAGCATACAGACAGCCTCTCTCAAGAACAACCACACAATCACAGCCACGACTTTAAGCAATAGCTCAACGAAATCGGCTAATGGCAATCATCTGAATAATCCCAACAAGATAACCATAACTAGGCGCAGTGTGCAGTCCGTCAGCACCTCCACGAACACAACCACAATCGGTGgcagtcagagccagagccacagccacagccacagtcacagcaaGACAAATACCAGCTACATTAAGAACTGTCTGattcgcagcagcagctgcagcaacacGGTCACCAATGTCACGACGCTGGCGCAGATtatgagcaacagcagcaccagcagcgcgTCCAGTCTCCTCAatcagcacaacaacaacagcaactgcagcaacagcagcaacttcAGCACCGCCTCCTCCgtgggcagcagcatcagcatcggcagcagcagcaacagcagcaacagcagcagcaacagcaacagcaacgacagcaacagcagcaccggCGGCGGTCACAGCCTGTCCTTCAAGAGCAACGGTAGACATGTTCCTGCCAACAGTGGGTCAGTGGGAGGTGCAGGCACAGTAGCCGCAAGCACTAATACCCCTGGCATTGGTGGCATCATCAGCATCGAAGCGCCGCGCAAGAACCGCCCCAAGCTATCCTCGCCAACGCGACACGGACCACAGCAGTGTCAGATTTGTTGCAAGATCTTTGGAAATGCCTCGGCGCTGGCCAAGCACAAACTGACGCACAGCGACGAACggaaatatatttgtgtgCTCTGCTCGAAGGCATTCAAGCGGCAAGATCACTTAAACGGACACATGATGACTCATCGGAACAAGAAGCCTTACGAATGTAAGGCGGACGGATGCGGCAAGTCCTACTGCGATGCCCGCTCCCTGCGCAGGCACTCGGAGAACCATCATGCGGGGGCAGTCACTCCCACCACCAGTCAATCGCTCTCCCCCACAGCCAGCTCCAGCGGGGCGAGCATTAGCAGCAGCGTCGGAGTGGCCACCAGTTCGCTGAGCCTCTCGCCGTCTACGGCCAGCGGGGATGCGAGCTCCCCGGACGGTGCCACGTGCATACGAACGTACATTTCCACGGGCAGCTCCTTGGTGGATGCCGCCACGGGTATCGCTCTCTCGGACGAACAGATCAAGGCCATGAACTTGCCCATCAAGACGGGCATGACCCTGTTGTCGCCCACCACCTCCACATCCTCCAATGGATCCTCCACggcctcgtcgtcgtcgctgtcgtcCTCGCCGTCGACCATCGCGACGTCGGTGGGCAATGGCACCGTGATAGCCAGCTCCCCCACCATCACGCTCAGCGATGGCATCAGCCTCGAGGGCGAGGGCCTGACCCGGGAGCAGCTCGATCTCATCAGCAAGATTATGCAACAGACGAAGCAGACGAGCGCCCAGGTGACCGTCTCCTCGCCCACCAGCGTCAGCTCCTACAAAATCAACACGAACTCGGCCCCGTCATCGTCCAGGCCCCGTACCTGGAACATGCAATTGCTCAACAGCGCCCAAAATGTGACGCTTCATGTGGAAGATGGCACCGATCTGGTGGCTTCTTCAGCGAACTCCCCCGTAGAAATCAAGGAGGAAGACgtcggccagcagcagcaacttgTGGCCACCGCCAATCCCCACCTGCTCGTGAAGCTCGACAAGCCCGTCGAGTGCAACCTCTGTCACCGTAAGTTCAAAAACATACCCGCCCTCAATGGGCACATGCGTCTGCACGGCGGCTACTTCAAGAAGGATCCGGAAACGAAGCGCAGCGAGAAGAAGGACTCTAGCGGCCCCCCCCTGCAGACGGCCAGCATCGGAGTGCGTGCCCTCATCGAGGAGAAGATCATCAGCAAGCGCAAGGACATGAACAAGGGCGCCTTCGTGGTACCCGCACCAccgcacagcagcagcaacagcagcagcagcaccaccaccacccttCGACGATCGATCAGCGACCTGGAGAGCTTCCTGAATCCGAAGAGCAGCTCTAGCGCATTCACCCAAACGCTCTCCACCAGCACGGCCACCACCACAGCGGTGCTGCCGGCGGCCACAACAATCAAGAGCAGCAACGGGCTCAGCATACAGCAGATCGGGCTGCCCCAGAGCATCGAGATCTTCAGTGGGGGCCAGAAGCAGTCGAAGACCCTCAGTCTTGGCAGCGGCACCAATACGATCACAATCACCACCAATAACGTGCCCACCACCACGACGATGAGTGCGCTGACCGCTCTGAAGGCAGGCGGCACCATTAGCGGCATATCCGCAGCCACCAACACGGATCCcaaggactccaccctgatcGAGCTGCTGAAGCGCGGCACTCGCATTGCCGTCACCTCCAAGAAGGCCCAGTCGCACACAACCCACAGCGGCACGAATGTGCTGATGACTACCCAAAATAGCACAGGATCGGGCCTGGGAGCTATCACAGAGCTGACCACCATCGGGGGGAGCAATCTCCAGACGATCGGCCGGCAGATCATCACCAACAACAATCGCACGGTGATCATACCTTCCGATGTCCAGGTGGTGGCCACCAAGAGCAAGCTGAGCAGCCTGTCCAGTCTCACGGGAAGTCTGATgaagaccagcagcagcgtgaATACATCCTGTTCGAGCGGCAGCATCTCCTTGGCCGATGACACGGCCCTCTCGCTGAACATCGCCCCCAGTCAGGAGGGGCACGTTGGCAGCGGGACCGGGGGAGTGATCACGAGCGGAGGAGGCGGAGTGTACACCGTTACCTATACCAGCGATGGCAGCGATCTGTTCGACGACTCAGAGGTGTACAACGTTTCCGACACGGAAATGCTGCTCCAGACAGTCGACTCCATGGAGCTGCTGAACGACGAAGAGGACGTGGCTCAGATCAAGAGCGAACATTCCGAGGACTTTGCCCTGCTCAGCGAGGCCGGCGACAGTGTGCACACCCAGCTGGTGAAGCTGGAGCCGGACACGGGCACCGCCAAcggctcctccagcagcaataacaccagcaccaccggcaacaccaccaccaccacgacaCCGCTGCCCACCTTCCAGCAATTCCATTCCAAGGAGCTCATCATGCAGAACAGCTCCCAGATCCAGGCGATAGCCAGCATGCGCGGCAGCATCCTgccctctccactccactcgccGCTGGCCTATCCGACGCCACCCTCCAGTCACGAGAACATGGCCCAGTCGTCGCCCTTCATTGAGGATGCGGCCGCCCAGTTCGTGGACGCCAGCAACACCTTCTTCGGAGACAAGACGGACTTCTCGCACATCTACTTCAAGACGGACGATGGCCAGCCCATCGAACAGCTGAACGAGAACGACAACGAGAAGATCCTGAAGCTGAAGTCGGTGCTGGAGGAGAGCAGCTTCGATCCCTCCATCAAGGTGGAGGACTTGCTGAATGGCACGGAAGACGACACCGAGTGCGACCTGCGCGAGTTTGCCGAAACGAATCTCTCGTTCCTCGACGAGGACCAGGAGTTTCTCAATGATTCCCGCAATGCCACCTCCCCGCTGTCGGAGTCCTTCTTCACCAGCGGCATTGGCTCGGCGGAGGATGTGAAGCAGGTGCTCCGAGAAGTGCTGCCCGACGAGAacatgcagctgcagctgaccAGCGAGGAGCAGGGGGAGAACATCATTGATCTCTACTACTTGCCGGGCCTGGGACTGCAGTCCCAGATGATGAACAACTCGGAGGACCCGATGCTCTCCTCCTCGCCACGCGAGTTCGGTCTACAGCGTCAGATGGGGCAGATCCAGGCAACGACTATGCCCCAGCCGATGGAGCAGCAACTCCAGCAAACCACGGCCATCTATCAGCAGCAAGAGTCGGACctccaacagcagccacagcagcagcaacagatacTGCAGCAGCTACAggatcagcaacagcagtctCAGCAGATCCTGGTCCCCCAGCAGTCGCTGGGCCAATCGGTGTCCATGCAGGCACAGgggggccagcagcagacagaATTCATGCTGCCCCTGGTGGGGGGTCATGGCTTTGCGGCGGTtaccagccagagccagttcCTGGATACCAGTCAGAGCACCATGACACTGCAGCCGCTCAACAGCCTGCTCCAGCCCCTGCTGTACGGCTCTAATGGCACATCCACCACAAACAATGCGGCAGTGCTCACCACCGACTGCCAGATGAATCCCAATGAAGGCCAGAGCACCGCTCTCGATGCCAGCCTGCTCTTTCCCTGCGGCGCCACAGCCCAGGCCTCTGCCACTAAtagcaatggcaatgggaagTCTCTGCTGGCGGCCCTGGCCACATCGGTGCCCACACCTGTGGTAATTGCCACTTCGCCCAGCGTGTCCAATCTGCAGCCGCTGTCGAATCAAACCAATTCCATACTGAAGCGCCGCCTGCGCTCGAACGCTCCCCAGGGGACGCAGAAGTTCTCCAAGTTCCACACCCTGTCGCCGCATCGCTCGAAGCTGCGCAAGCCCTCCCGCACGCACTACACGCCGGCCCCCATCCTCAATCCGGACCGCAAGGGAACAGGGCTGTATTGCATTGTGCGGAAGCAGCAGGGCCAGGGCATATTCGATGCCTTCGAAGATGACTTTGGCGATCCGGTGGGCCTGGTCGACTTCTCGGACGAGTCGAAGGTGAATCTCGGCTCGGCATATCAGGCACAGATACCCTGCTGCAAGCCGTTGGAGGAGGCCGCCAGTGAGCCCATGGGTGCGGACATGATGTGGAATCCCGAGGTGCAGGAGGACGACAAAATCCTGATGCGTTACATAGATCTCAGCAAATCATCGGCCGTGCCAATGGGCAGTCATTCCGAGGAGGTGGCCCTCCACACGCTGCTCAAGTCGCAGGGCAattcggcggcggcggtgctGACCCTCCTCCAGACGCAGTCCAGTGCATTTCAAATGAAGTGGACCGCCTTCGAGCTGGAGCAGTTCCTGCGTGGTCTGGAGAAGCACGGCAAGGACTTTGGCAAGATTGCCAGCGAGCTTCGCACCAAGTCCTCGGGGGAGTGTGTGCAAATGTATTACTTCTGGAAGAAGCTCTGCGTGGACTATAAGGTATCGCACTTGAAGATGGAGCCAGTGACCCACATCGTGCCCGCCGTGGAGAAGCCCTATGTTTGCGAGATTGCCGACTGTTCAGCGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCACGTTCGCATACACGCTTTTGGCCGTaatgccagcagcaacaacagcaacagcaacaacaacaacagcagcaacagcaacaacagcagcagcaacagtacGCAGCATGCCCCGGCAAATAATGCCACAAACAGCAACCAACAAAGTTCCAACAGCTACGCATGCGCGCCCCTGTCAACCAACAGCGGCACTAATCCATCAAGCAatgcaacatcagcaacagcaaatgcAACGAATCTTAGTGGCAACAGTGCCACCATCAATGGCGGTGGCAACCCAAACACAACGACAGCCACGTCCTCCTCGACTCTGACAGCCTCCAAAGTGGAAACGGGCAACACGAACGCCACTGCCCCGCCCACTGTCAAGGAGGGGGAATTTCCCTGCAAGGTGTGCGGCAAAGTCTTCAATAAGGTCAAGAGTCGCAGTGCTCATATGAAGACGCATCGGGTTCAGGAATCGGATCCGTCGCCcaaaaaccagcaacaaaagcagcagctgaGCAATCTAGCAAATATTATCACAGGATCAGTCACTGGGACAGGGACATCGACAGGCACATCGACAGGAACGGCATCGGGATTAGCATCAACAGCCGCCTCATCAGCGATCGCAACGTCGTCTTAG
- Protein Sequence
- MAAINTVPKSIHLPLTSLSSAPRVLMCSASVGSEGSVTLQLRDASALEAATSAATAATATATASTKSATSTGGNGVTTLATSSTSALENALTIGYPDPEMLADVLGSIQTASLKNNHTITATTLSNSSTKSANGNHLNNPNKITITRRSVQSVSTSTNTTTIGGSQSQSHSHSHSHSKTNTSYIKNCLIRSSSCSNTVTNVTTLAQIMSNSSTSSASSLLNQHNNNSNCSNSSNFSTASSVGSSISIGSSSNSSNSSSNSNSNDSNSSTGGGHSLSFKSNGRHVPANSGSVGGAGTVAASTNTPGIGGIISIEAPRKNRPKLSSPTRHGPQQCQICCKIFGNASALAKHKLTHSDERKYICVLCSKAFKRQDHLNGHMMTHRNKKPYECKADGCGKSYCDARSLRRHSENHHAGAVTPTTSQSLSPTASSSGASISSSVGVATSSLSLSPSTASGDASSPDGATCIRTYISTGSSLVDAATGIALSDEQIKAMNLPIKTGMTLLSPTTSTSSNGSSTASSSSLSSSPSTIATSVGNGTVIASSPTITLSDGISLEGEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVSSYKINTNSAPSSSRPRTWNMQLLNSAQNVTLHVEDGTDLVASSANSPVEIKEEDVGQQQQLVATANPHLLVKLDKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDPETKRSEKKDSSGPPLQTASIGVRALIEEKIISKRKDMNKGAFVVPAPPHSSSNSSSSTTTTLRRSISDLESFLNPKSSSSAFTQTLSTSTATTTAVLPAATTIKSSNGLSIQQIGLPQSIEIFSGGQKQSKTLSLGSGTNTITITTNNVPTTTTMSALTALKAGGTISGISAATNTDPKDSTLIELLKRGTRIAVTSKKAQSHTTHSGTNVLMTTQNSTGSGLGAITELTTIGGSNLQTIGRQIITNNNRTVIIPSDVQVVATKSKLSSLSSLTGSLMKTSSSVNTSCSSGSISLADDTALSLNIAPSQEGHVGSGTGGVITSGGGGVYTVTYTSDGSDLFDDSEVYNVSDTEMLLQTVDSMELLNDEEDVAQIKSEHSEDFALLSEAGDSVHTQLVKLEPDTGTANGSSSSNNTSTTGNTTTTTTPLPTFQQFHSKELIMQNSSQIQAIASMRGSILPSPLHSPLAYPTPPSSHENMAQSSPFIEDAAAQFVDASNTFFGDKTDFSHIYFKTDDGQPIEQLNENDNEKILKLKSVLEESSFDPSIKVEDLLNGTEDDTECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPDENMQLQLTSEEQGENIIDLYYLPGLGLQSQMMNNSEDPMLSSSPREFGLQRQMGQIQATTMPQPMEQQLQQTTAIYQQQESDLQQQPQQQQQILQQLQDQQQQSQQILVPQQSLGQSVSMQAQGGQQQTEFMLPLVGGHGFAAVTSQSQFLDTSQSTMTLQPLNSLLQPLLYGSNGTSTTNNAAVLTTDCQMNPNEGQSTALDASLLFPCGATAQASATNSNGNGKSLLAALATSVPTPVVIATSPSVSNLQPLSNQTNSILKRRLRSNAPQGTQKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYCIVRKQQGQGIFDAFEDDFGDPVGLVDFSDESKVNLGSAYQAQIPCCKPLEEAASEPMGADMMWNPEVQEDDKILMRYIDLSKSSAVPMGSHSEEVALHTLLKSQGNSAAAVLTLLQTQSSAFQMKWTAFELEQFLRGLEKHGKDFGKIASELRTKSSGECVQMYYFWKKLCVDYKVSHLKMEPVTHIVPAVEKPYVCEIADCSASFSSKAALHGHVRIHAFGRNASSNNSNSNNNNSSNSNNSSSNSTQHAPANNATNSNQQSSNSYACAPLSTNSGTNPSSNATSATANATNLSGNSATINGGGNPNTTTATSSSTLTASKVETGNTNATAPPTVKEGEFPCKVCGKVFNKVKSRSAHMKTHRVQESDPSPKNQQQKQQLSNLANIITGSVTGTGTSTGTSTGTASGLASTAASSAIATSS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00487234;
- 90% Identity
- iTF_00581040; iTF_00535978; iTF_00536297; iTF_00517646; iTF_00517979; iTF_00564239; iTF_00563838; iTF_00603605; iTF_00603282; iTF_00471896; iTF_00474053; iTF_00473716; iTF_00471550;
- 80% Identity
- iTF_00581040;