g5639.t1
Basic Information
- Insect
- Drosophila pseudoobscura
- Gene Symbol
- bab2
- Assembly
- GCA_009870125.2
- Location
- CM020869.1:13735610-13737748[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-12 1.2e-08 34.7 0.1 1 44 405 448 405 449 0.91
Sequence Information
- Coding Sequence
- ATGGGCGGGCCCACAGCGCCCGTGGCCAGCAGCGAGGGCCAGACGTACTGCCTGCGCTGGAACAACCACCAGACCAATCTGGTGCAGATCCTCCACGCACTGCACGAGGTCGGCAGCTACGTCGACTGCACCCTAGTCGTCGACGATGAGCAGTTCAAGGCACACCGCGTGGTGCTGGCGGCGAACTCGCCGTACTTCCAGCACATCCTGCAGGACGTGCCCCAGGACCAGTGCAGCATAATCCTGCCGGGCGTGAGGGGCTTCGAGATCGCGGCCTTGCTTCAGTACATGTACACGGGTGAGACCACGGTGACCAAGAGCCAGGAGCCGGAGATCCTGCGCACTGCCAAGGAGCTGCAGGTAAAGGGGCTCTACGACAATCTGATGAAGTACAATCACAAGGCGGCCAGCGCAGTGGAGGAGCGTGACCAGAGCCAGTTCCATGCCAGCATCACGCCCACCTCCAGCTCGGGATTGGGCGTTGGCTCTGGCAAGCCCCTCAACGGGTCCTCTGCCGACGGCTCCTTcggccagcagcaccacaacTCCTCCTCCGTGATCTCAACGTCCACGCACATCTCGCCCAGCGCCGCCATCTCGAGCAGCTGctcaccaccgccgccgccattcGGAAGCTACCAGCCGCCGTACACAAACTTCCCGCCTGGATCAGGACCTATCAATCCACATCCCCACATCCCAGCCGGTGAGACTCCCCTGACGCCCACGCATGCCACTTCGCACGCCGTAGCCGGTGAGGCAGGCCAGTGGCCCCTCTCGCcctccgctgccgctgccgccatgCTGAACTCCGTCTATGAGTCCGCCGCCGACATGAATCCGCTCAAGCGCAAGAAGCTCTCGGCCATCTCAAGCATGCTACTCAACAGCACCCGGGACACGCCCATTCTGCGCAACGTGCTGGCCCAGGCCAACCCAGCTGACTCCTCGCAGCCCAATCCTCTGCTGCTGAAGagctcctccacctcctccctAAACGAGAAGACTCCCACccatcagcaccagcaccagccaccGCACCAGCACCACAGCGGAGTCGGCGTGAGCGGCGGCACCGGTAGCCACAGCTTCAACGGCTCGGACTACGGCGGCGACAAGGAGCCCCTCTCACCGCACACGGACCGTTCCTTTGATGAGGAGACTGGCGGGCCGGGCGGCAAGAAGCCGGAGTGGAAGCGTTATAAGCAGTACACCCGGGCGGACATGATGTGTGCCATTCAGGCCGTTCGGGAAGGCATGAGCGCGCTCCAGGCGAGCCGCAAGTACGGACTACCCAGCCGCACCCTCTACGACAAGGTCCGCAAGCTGAACATCACTACGGGCCGTGGCACGCATCGCACACCCAAGCGCAGCCCACCCGGGGTGGAGTCCTCCGCCGCCTTTCCCTACtccgcagcagccgctgccgcagctgccCACAGCTACGGACATGTCCACGGGCATGGCCAGACGGATCTAGAGCGTGAGCCGAAGGAGCATGGTCAGCATAGTGGCCATGGAGGTGGCCACCACGGCATGCCACCCACGATTCCCCACTCGGCAGCCGCCCTTCTGGATCACGCCTTTCTGCAGCAGGCCCTGGAGAACCGAGGCGGGGATATGGCCGGGCGTGAAGCACTCCACGCCATGGCCCTGGCAGCGGCCGCCCACGCAGCTGCCAACCGAATGTCTAGCAGCCCCCAGGAGTCTGGCTCCAATGGACACGCAGCCAGATCTCCAAGTCCAAGGGCTCGGCACTACTCCGAGCACGAAGCCAtggagatagagatggagaagCACGAGCAGCGCCTGATCAAGAGGGAGCGTGACCAGGACGAGCGCGATGATGCTGACGATGAAGATGATCATGACCAGGAGCAGGATCACGATCACGATCACGACCATGTGGAAGATCTATCGCTGGCACGCAAAGAACGCCCTGAGTCGCCCTACTCTCCTCAGCCCCCACGGGCCTCCTCGCCGGTCGAGAGCGCCAGTGTGATCATGCACTCCAACAGCGCCTCCACCAACGGAAAGGACCACGAGGATTATCCCCACTCACCACCGCCCGTGGCCCTGGGCCTAGGCCTGAAGCGGGAGCTACTTGGCGGCGAGGAGTCGCAGGCTAGAACCGACTGA
- Protein Sequence
- MGGPTAPVASSEGQTYCLRWNNHQTNLVQILHALHEVGSYVDCTLVVDDEQFKAHRVVLAANSPYFQHILQDVPQDQCSIILPGVRGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKYNHKAASAVEERDQSQFHASITPTSSSGLGVGSGKPLNGSSADGSFGQQHHNSSSVISTSTHISPSAAISSSCSPPPPPFGSYQPPYTNFPPGSGPINPHPHIPAGETPLTPTHATSHAVAGEAGQWPLSPSAAAAAMLNSVYESAADMNPLKRKKLSAISSMLLNSTRDTPILRNVLAQANPADSSQPNPLLLKSSSTSSLNEKTPTHQHQHQPPHQHHSGVGVSGGTGSHSFNGSDYGGDKEPLSPHTDRSFDEETGGPGGKKPEWKRYKQYTRADMMCAIQAVREGMSALQASRKYGLPSRTLYDKVRKLNITTGRGTHRTPKRSPPGVESSAAFPYSAAAAAAAAHSYGHVHGHGQTDLEREPKEHGQHSGHGGGHHGMPPTIPHSAAALLDHAFLQQALENRGGDMAGREALHAMALAAAAHAAANRMSSSPQESGSNGHAARSPSPRARHYSEHEAMEIEMEKHEQRLIKRERDQDERDDADDEDDHDQEQDHDHDHDHVEDLSLARKERPESPYSPQPPRASSPVESASVIMHSNSASTNGKDHEDYPHSPPPVALGLGLKRELLGGEESQARTD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611434;
- 90% Identity
- iTF_00517637;
- 80% Identity
- iTF_00580823;