Basic Information

Insect: Drosophila planitibia
Gene Symbol: -
Assembly: GCA_035043785.1
Location: JAWNMS010000023.1:4148933-4151110[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.011 0.68 10.4 4.6 3 23 178 198 177 198 0.97

2 12 0.00014 0.0084 16.4 0.3 1 23 204 229 204 229 0.94

3 12 0.0011 0.071 13.5 0.7 1 23 236 261 236 261 0.93

4 12 0.00053 0.033 14.5 5.1 1 23 271 293 271 293 0.97

5 12 0.00018 0.011 16.0 1.8 2 23 301 322 300 322 0.96

6 12 0.0066 0.41 11.1 0.5 1 23 328 350 328 350 0.97

7 12 0.026 1.6 9.2 1.9 1 23 356 379 356 379 0.97

8 12 0.0041 0.26 11.7 3.7 1 23 385 407 385 407 0.96

9 12 0.00049 0.031 14.6 0.6 3 23 415 435 413 435 0.97

10 12 0.00017 0.01 16.1 0.8 1 23 526 549 526 549 0.95

11 12 0.16 10 6.7 2.9 1 21 555 574 555 577 0.71

12 12 7.7e-06 0.00048 20.3 3.4 1 23 583 606 583 606 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.011	0.68	10.4	4.6	3	23	178	198	177	198	0.97
2	12	0.00014	0.0084	16.4	0.3	1	23	204	229	204	229	0.94
3	12	0.0011	0.071	13.5	0.7	1	23	236	261	236	261	0.93
4	12	0.00053	0.033	14.5	5.1	1	23	271	293	271	293	0.97
5	12	0.00018	0.011	16.0	1.8	2	23	301	322	300	322	0.96
6	12	0.0066	0.41	11.1	0.5	1	23	328	350	328	350	0.97
7	12	0.026	1.6	9.2	1.9	1	23	356	379	356	379	0.97
8	12	0.0041	0.26	11.7	3.7	1	23	385	407	385	407	0.96
9	12	0.00049	0.031	14.6	0.6	3	23	415	435	413	435	0.97
10	12	0.00017	0.01	16.1	0.8	1	23	526	549	526	549	0.95
11	12	0.16	10	6.7	2.9	1	21	555	574	555	577	0.71
12	12	7.7e-06	0.00048	20.3	3.4	1	23	583	606	583	606	0.98

Sequence Information

Coding Sequence: ATGGTCGCTAGCAATTATTTCGTACCCGTTGCTGGTGATATTGATAAAGTCGATATGCTGACTGGGGTGCCGGGCGATGGGGAAGCGGATGACGATAACATCAACTTTGATCCGCTTCTGAATACCAAGATAGAAATTGTGGAAACTGAGGAGgatgtttttaaaatgctaGATGATGTCGACAAGGAAGCAGAAGAGGTTGAGAAGGAAGTAGAGAGGGAGGTAGAGAGGGCAAAGGATATATCCAGTGATAGTGACAACgacaatgataatgataatgatgacgatAGGGATGTTGACTTTCAAGTGAATAGTAGCGACTCTGACGACGCCGTACCCTTGTCCCGCTTACGTAGTTCGACcagagcaagaacaacaaaggCCAAATCAAATACTGTGGATGACGATGAAGATGATTCCTCTAGCTTTGAATGGGCTGAGGATAAAGAGGATGACATGGATAAACCTAAGCCAAAGCCAAGACGAAAACGCGCTCAAGTCGCTTCGGCACCTCTCGATGGATTGGTTGACTGTCACATTTGTCAGGAGCAATTCAAGAGCACCAAACTCTACGAGGAACACATGAAACATCACAACGATCAATTGCCATTCCAGTGCTCTGTTGAAGAATGCAAGAAGGGTTTCACTACGGCTGGTGGCCTGCGCCTTCATATGGACCACGCCCATTCAGAGTTCTCTGAAGTGCACGCCTGCACTGCTGAGGGATGTGACAAGACCTTTCCTCGATCTGTCTTACTCACGTTCCATATGAAAAAGGTGCACAACATTATCAAGACACCGTCGCGGAATCATCCGTGCACGGAATGCGACAAAGTCTTCCGTTGTTCAACGGCACTCAAGAAGCACATGTATAAACACACTGGCGAGGAGAAGCCAATCTCCTGTAACATCTGTAACAAACGTTTTCACATAAACAGCGATCTCAGAGATCATCTCTTGCGCCATGCAGGTGTAAAGAATCATGTGTGTCCCTACTGCGGCGTCGGTAAAACCACTCGCCAGGAGTGGAATAAACACATTCTGACCCACACCAAGGAAAAACAGTTCCAGTGTCGCCAGTGCGATCATGCTTCCCACAACAAACAAGCTCTGGCCAATCACGTCAAGGTGGTTCATATGAAGATCAAGGACTTCGCTTGTCAGTATTGCGGTAAAAAGTTTAGCATGTCGTATTCGTGCAAAGTTCACGAGAGACTCCACACGGGCGAGAACTGCAGCGATTGCAAGATCTGTGGCAAGGTGTTCCTTTTTGAGAAGGGATTGACCCAACATTTAAAGACCCATGAGAAGTGCGATAAAACACGGTCTGCTCCTACAACTTCAGTCAAACCGAAAGACGATGGAGTCGCGCAAGGCACACAAAACGCTATCCAAGAATTGACTCAGCCAGTGGACGGGAAAGTCGTTTCAGAAGTTTCCATCAAGCCGAAGACATCAAATAGAGTTGAGCGTGTAGATATATCGCAGCTAGCGGGCACCTCTGTCAATCCAATATCATCAGTATCGGTGCCCTCATGGTCGCCGCAAGTCAACTTCACAAAGAAGGAAGGCCAGCATATTTGTCCGGGATGTGGGCGTGGTTTCAATCACATTGGCAACATGAAGCTTCACTACAAGATAATACACGAGAAGGTGAAGGACTTTGCTTGTCGCTTTTGCCCGAAGCGTTTTTCGAAGGCACACATATTAAAACATCATGAATGGGTTCACACTGGCGAGAAACCGTACGAGTGCAAGGTTTGCGGTAAACATTTTCGGCAGGAGTCAAGTCGGAAAAACCACTTGAGAAGAGTGCACGAGAATGCGAAACCTGCAAAGGAGCCGAGACCACCAAAGACTGTTCTTAAGCCAACTGGACCACACGTCTtactcaacaaaaaacacgTCCTAAAGAATTTTGATGAGTTCCAGGATCCTGCTGCAGAGCAAGccgctgcgactgctgcatTGCTTGCCCAACAGCAGGAAGAGAATGAAGCGAAGCGAAGGGCTGAAGAAGAAACTCGCAAGATTCAGGAAGCTGCATGTGAACAACTTCAAAGGCTGCAGAAGGAGCAACTTATCGAGAAGATATCCATTAACAGCTTTCAAGTAAAAAGATCCGAATCAGGTGTCACTGTGGATGACCTGAAAGTAGATCCTACGGAAAAAGAATAA
Protein Sequence: MVASNYFVPVAGDIDKVDMLTGVPGDGEADDDNINFDPLLNTKIEIVETEEDVFKMLDDVDKEAEEVEKEVEREVERAKDISSDSDNDNDNDNDDDRDVDFQVNSSDSDDAVPLSRLRSSTRARTTKAKSNTVDDDEDDSSSFEWAEDKEDDMDKPKPKPRRKRAQVASAPLDGLVDCHICQEQFKSTKLYEEHMKHHNDQLPFQCSVEECKKGFTTAGGLRLHMDHAHSEFSEVHACTAEGCDKTFPRSVLLTFHMKKVHNIIKTPSRNHPCTECDKVFRCSTALKKHMYKHTGEEKPISCNICNKRFHINSDLRDHLLRHAGVKNHVCPYCGVGKTTRQEWNKHILTHTKEKQFQCRQCDHASHNKQALANHVKVVHMKIKDFACQYCGKKFSMSYSCKVHERLHTGENCSDCKICGKVFLFEKGLTQHLKTHEKCDKTRSAPTTSVKPKDDGVAQGTQNAIQELTQPVDGKVVSEVSIKPKTSNRVERVDISQLAGTSVNPISSVSVPSWSPQVNFTKKEGQHICPGCGRGFNHIGNMKLHYKIIHEKVKDFACRFCPKRFSKAHILKHHEWVHTGEKPYECKVCGKHFRQESSRKNHLRRVHENAKPAKEPRPPKTVLKPTGPHVLLNKKHVLKNFDEFQDPAAEQAAATAALLAQQQEENEAKRRAEEETRKIQEAACEQLQRLQKEQLIEKISINSFQVKRSESGVTVDDLKVDPTEKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00498311;
90% Identity: iTF_00517164;
80% Identity: -