Dpla007687.1
Basic Information
- Insect
- Drosophila planitibia
- Gene Symbol
- retn
- Assembly
- GCA_035043785.1
- Location
- JAWNMS010000051.1:4593230-4603212[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-26 5.6e-23 81.0 0.0 2 89 20 105 19 105 0.96 2 2 2.3 3.8e+03 -1.8 0.2 20 40 268 293 240 307 0.53
Sequence Information
- Coding Sequence
- ATGCTCATCTCGGAGGATCAAATACAGGAGCTCTACGAAATCAATGATGATCCCAAGCGCAAGGAGTTTCTCGATGATTTGTTTTCGTTTATGCAAAAGCGAGGCACGCCCATCAACCGCCTGCCCATAATGGCCAAATCGGTGCTGGATCTGTATGAGCTATATAATCTGGTGATAGCGCGCGGCGGCCTCGTCGATGTCATCAACAAGAAGCTCTGGCAGGAGATTATCAAGGGACTGCATCTGCCATCGAGCATCACCAGTGCGGCATTCACCCTGCGCACCCAATACATGAAGTATTTGTACCCCTACGAGTGCGAGAAGAAGAACCTCAGCAGTCCCGCCGAACTGCAGGCGGCCATCGATGGCAATCGTCGCGAAGGACGTCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAGATGCCGCTGACAACAATTTCGCGACCACCGTTGCCTGGGGGCATGCAACAGATGTCGCCACTGGCGCTGGTCACACACGCGGCGGCTGCAAACAATCAGCAGGCGCAGGCAgcggccgcagcagcagcagcacatcgaCGGCTGATGGGCGGACCGGCCTTTGGTCAGATGCCGAATCTGGTGACGCAGGAGATTGAGAATCGCATGATGGAATATCTGCAGCTTATACAGGCcaagaaggagcagcagcagcagcaacagaatgCACCAATTCTGGGCGCCACACATccccaccagcagcagcagcagcagcagcaacaatcgctgcatcatcaccaacaacaacaacaacagcagcagcagcagcagcgacagcgctCACAAAGCCCCGAGCTGAGCACACGTGATGCGCTGAGTGCACAGGTGGCGCTTTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGCGAAGCCTTGAACCTTTCCGATTCGCCGCCAACTTTGAATTTGAATCACATAAAACGGGAAAGGGAACGCGATCCGACGCCAGAACCAACGGATCTGGAGGAAACGGCACttcagccgccgccgccgaaACGTGTGGGCAGCGGCCTAATGCCGCCCGGTTTTCCCGCCAACTTTTACTTGAATCCCCACAATATGGCCGCTGTGGCAGCCGCCGCCGGTTTTCATCACCAGGCCGCcaacaatcatcatcatcatcagcagcaacagcagcagcagcaacagtcgcagcagcaggatGCAGCGTCAGAGGGTGAACCAGAGGATGAGTATGGCAATGGGGAGCATAACACCACCGGCAACTCATCGTCGCTGCAAGATGACAGTGAGCCGCAGCAGCTGAATGGACACCACCtccaccatcatcatcatgagcATAACGATCTGCATCATGATCTGCATCAtgagcatcatcatcatcatcagaatCATCTGGACAAGTCGGATGACTCGGCCATTGAGAACTCGCCCAGCAcatcgacaacgacaacaacaacaacttcatcATCCACATCCAAATCGCATCGTCACAGCTCGCCGGTGtccacaaaaaagaagagcagcgtcaactgcaacagcagcagcaacaacaacaacaacaataacaacaacaacaataacaagacgCAGTCCTTGTCGTGTGCGAAGGatgcaggcaacaacagcagcagcagcagtgccagcGATGCCAAACTGAATCCCCTCGAGACGCTCAGCCTGCTCTCGGGCATGCAGTTTCAAGTGGCACGCAACGGCACCAATGCAAATggcgagcagcagctgattgTCAATCTCGAACTAAATGGCATTAAGTACTCGGGTGTGCTGGTGGCAGCCacccaagcagcagcagttgcagcagccaaGCCAGAGGCAGGACAAGCTGAGCGGGAGCAGGCAGTGacgccaactgctgctgctgctgttgctgctgctgaggagCCAGCAgtgaggaggagcagcagcagcactgacGATGAGCTCAAGCATGAAAACAGCCAGGAACTTGGCCAGAACGAGGCAACTGATGAGGAAACAAcgcaggaacaacaacaacaacaacaacaacagcaacagcagcagcaacaacaactcacagATGAGATTGTGAATGGTGCAGGAATTGGGGGGGTTGGTGTTGGGGTCAGCGGTGCAGTGGGTGCAAGTCTGCTTAAGGATGCTGTGGTCAGTTCATAG
- Protein Sequence
- MLISEDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSSPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTTISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQQQQQQNAPILGATHPHQQQQQQQQQSLHHHQQQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPTDLEETALQPPPPKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQAANNHHHHQQQQQQQQQSQQQDAASEGEPEDEYGNGEHNTTGNSSSLQDDSEPQQLNGHHLHHHHHEHNDLHHDLHHEHHHHHQNHLDKSDDSAIENSPSTSTTTTTTTSSSTSKSHRHSSPVSTKKKSSVNCNSSSNNNNNNNNNNNNKTQSLSCAKDAGNNSSSSSASDAKLNPLETLSLLSGMQFQVARNGTNANGEQQLIVNLELNGIKYSGVLVAATQAAAVAAAKPEAGQAEREQAVTPTAAAAVAAAEEPAVRRSSSSTDDELKHENSQELGQNEATDEETTQEQQQQQQQQQQQQQQQLTDEIVNGAGIGGVGVGVSGAVGASLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00570178;
- 90% Identity
- iTF_00516774;
- 80% Identity
- -