Dpic002403.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila picticornis
Gene Symbol
Trl
Assembly
GCA_035043845.1
Location
JAWNMR010000122.1:16179317-16186000[+]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.7e-43 3e-39 132.8 6.1 1 54 324 377 324 377 0.99
2 2 2 1.6e+04 -4.2 0.5 9 17 388 396 379 402 0.51

Sequence Information

Coding Sequence
ATGTCGTTGCCAATGAATTCACTGTACTCGCTCACCTGGGGTGATTATGGCACATCTCTGGTATCGGCCATACAATTGTTGCGCTGCCATGGCGACCTAGTCGATTGTACGTTGGCCGCCGGCGGACGCAGTTTTCCAGCGCACAAAATTGTGCTCTGTGCGGCATCGCCATTTCTGTTGGACCTGCTAAAGAACACGCCATGCAAACATCCAGTGGTGATGTTGGCTGGCGTCAATGCCAACGATTTGGAGGCCCTGCTCGAGTTTGTCTACCGTGGCGAAGTGAGCGTCGATCATGCACAGTTGCCATCGCTGTTGCAGGCGGCACAGTGCCTCAATATTCAGGGCCTGGCACCGCAGACGGTGACTAAAGATGATTATACAACGCACTCGATACAACTGCAGCATATGATACCCCAGCACCATGAACAGGACCAATTGATAGCGACGATTGCAACGGCACCGCAGCAAACTGTGCACGCACAGGTTGTGGAGGACATTCACCATCAGGGACAGATACTGCAGGCGACCACACAGACCAATGCCGCCGGCCACCAGCAAACGATTGTCACAGCGGATACATCCAAGCATGATCAGGCCGTCATACAAAGTTTCTTGCCCGCACGCAAGCGAAAGCCGCGTGTCAAAAAAATGTCACCAACGGCACcgaaaataagcaaaattgaAGGCATGGACACGATTATGGGCACACCGACCTCATCGCACGCGGCGGccgcacagcaacagcaagtggtgcaacagcagcaggtgctCGATGAGAATGGCGCCGAAACGCAACTGTTGTCGACGACGCCGATCATCAAGAGTGAAGGGCAAAAGGTTGAGACAATTGTGACCATGGATCCCAACAATATGATACCTGTGACATCGGCCAATGCGGCCACCGGTGAGATAACGACAGCATCTGGAACAACGGTAACGCCTAGCGCCAGTGGCACCACTGCCACGCCCAAGGCCAAACGCACCAAACATCCGCCTGGCACAGAAAaacCACGATCACGCTCACAATCGGAACAGCCTGCAACATGCCCCATTTGCTATGCGATCATACGTCAATCGCGCAATCTGCGACGCCATCTCGAGCTGCGGCACTTCGCCAAGCCGGGCGTCAAAAAGGAGAAGAAAATACCCAGTGGCAAGAAACCTGGCAGCAGCACACCTGGCTCCGTTCAATCCCAGTCCCAAGGCGGCAGTGGCACTTTGAACTCCAGCGGAGTTGTGCCCCAAGTGCAAACGGTGCAATCGCTGCATCCACTGCAAGGCGTGCAAGTGAAAAAGGATCCCGatgcccaacagcagcagcaacagcagcagcagcaacaacagcagcagcagcagcagcaacagcagcaacaaccacaacaaacaatgaCAGTAACGACCACAGCCGGCGgccaagtgcaacagcagcaggtgcagcagcaagttcaagtgcaacagcagcaaacgtTGCATCATCAGATCATCGATTCGTCGGGCAACCTGACAACGCCAACGACCAGTGCCCAAGCTGCCGCCCAACAGCAGGCGgccaatcagcagcagcagcaacagctggtGGCTCAGTCGGATGGCAGTGAGAGTGGTGCGCCGTTGTCAATTGCTCAGGTGCAAACGTTGCAGGGTCATCAGATCATTGGCAATATAAATCAGGTGAATATGACtgattttcaacaacaacagcaacagccgcagcagcaacaacaacagcagcaacaacaacaacaacaacaacaacagcaacaacaacaaacacaaccacaacagacGCTTTGA
Protein Sequence
MSLPMNSLYSLTWGDYGTSLVSAIQLLRCHGDLVDCTLAAGGRSFPAHKIVLCAASPFLLDLLKNTPCKHPVVMLAGVNANDLEALLEFVYRGEVSVDHAQLPSLLQAAQCLNIQGLAPQTVTKDDYTTHSIQLQHMIPQHHEQDQLIATIATAPQQTVHAQVVEDIHHQGQILQATTQTNAAGHQQTIVTADTSKHDQAVIQSFLPARKRKPRVKKMSPTAPKISKIEGMDTIMGTPTSSHAAAAQQQQVVQQQQVLDENGAETQLLSTTPIIKSEGQKVETIVTMDPNNMIPVTSANAATGEITTASGTTVTPSASGTTATPKAKRTKHPPGTEKPRSRSQSEQPATCPICYAIIRQSRNLRRHLELRHFAKPGVKKEKKIPSGKKPGSSTPGSVQSQSQGGSGTLNSSGVVPQVQTVQSLHPLQGVQVKKDPDAQQQQQQQQQQQQQQQQQQQQQQPQQTMTVTTTAGGQVQQQQVQQQVQVQQQQTLHHQIIDSSGNLTTPTTSAQAAAQQQAANQQQQQQLVAQSDGSESGAPLSIAQVQTLQGHQIIGNINQVNMTDFQQQQQQPQQQQQQQQQQQQQQQQQQQQTQPQQTL