Basic Information

Insect: Drosophila persimilis
Gene Symbol: -
Assembly: GCA_003286085.2
Location: NW:2978352-2982223[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.077 5.4e+02 0.5 0.1 18 32 8 22 6 30 0.79

2 5 0.011 80 3.1 0.1 26 52 211 237 192 238 0.88

3 5 1.3e-05 0.089 12.6 0.1 22 47 263 288 259 295 0.84

4 5 1.4e-05 0.1 12.4 0.4 11 43 308 340 299 345 0.79

5 5 0.011 80 3.1 0.8 16 44 342 370 340 379 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.077	5.4e+02	0.5	0.1	18	32	8	22	6	30	0.79
2	5	0.011	80	3.1	0.1	26	52	211	237	192	238	0.88
3	5	1.3e-05	0.089	12.6	0.1	22	47	263	288	259	295	0.84
4	5	1.4e-05	0.1	12.4	0.4	11	43	308	340	299	345	0.79
5	5	0.011	80	3.1	0.8	16	44	342	370	340	379	0.77

Sequence Information

Coding Sequence: ATGTCATCGAATGTGGTATTCCGATCCGGCACTCGCGTTGCGCGCACATGTCGTGTCTGCTATGTCCCCTCCCCGAACAGCTTCTCTCTATTCAAGCCAAACAGGATATGTGGCCAAATCACAACGCTGGCCAGGGTCCTTAGCTACTGCGTTAGCGTGGATGTGCTCGAGGAGGAGGACTTTATGCCAGACCACATATGCGGCAGCTGCGCAACGAATCTCGAGCAGGTCATGGAGTTCAAGCAGAAGGCCCGCAACATAGATCAGTTCCTAAGGGAACGTCATGAAAAGCGCTGTGCCAGCCTGCCAATAAATGGGGTGAAACTGAATGAACAGCACGCAGCAGAGCTCAATAATGATCTGGAAATAGTCGAGGAGGAACAGGAAGAGAGCAACGTGCTAGTGGGTTGCGACATTATTGAGGAAATGCCTGAAGATGATATGCACATGGCAAGCCACATTCCAGAAGATCTATACGAGGTTGTCGAAgtgcaggagcagcagcagcgggaggaggagaaggaagAGGAAGTAGAGGAGCTGGCTCAGGAGGACACCAGTGaggaagagcagcagccagcagcaaccGCTGCCCGAACCAGAAGACCAAAGCCAATCTCCGATCTGCTGCAGTGTAAGATCTGCAACAAGCAGCTGAGCACATCCAACTCGTTCAAGTACCACATGCAACTGCATGGCGATGCCAAGCCCTTCGAGTGCACGATTTGCGGGGAGTCATTCAAGACACGCAACGCCTTTGATGGGCACATAACGACTCACGATCCAAATAATCCCAATACGTGTAACATATGCGGTAAGTTCTATCGACAGGCCTCGTCGCTGCGCACCCACATGCTCGCCCACAAAGGGGTCAAGCCATACCAGTGCACCCTATGCGGCAAGCGGCTCACCCAGAAGTCCGGCTACAAGAAGCACATGCTGACTCACACCGGCGAGAAGCCGCACACCTGCGACATCTGCCATCGCTCCTTCCGCTACTCGAGCAACCTCATTGCCCACAAGCGATGCCACAGCCAGGAGAAGCCGCACGAGTGCCAGGTCTGTCACAAGCGCAGCTTTGCCAACAGCTCCGATCTGACACGCCACATGCTGGTCCATTCCAACGAGCGTCCCTTCAAGTGTCTCGATTGTGGCAAAACCTTCAAGCGACAGATATCCCTCAATGTCCACATGAAGTCGAAGAAAACAGCGGCCATGGAGGAGTCGTCTCTGGAGTACGACGAGGAGAACTAA
Protein Sequence: MSSNVVFRSGTRVARTCRVCYVPSPNSFSLFKPNRICGQITTLARVLSYCVSVDVLEEEDFMPDHICGSCATNLEQVMEFKQKARNIDQFLRERHEKRCASLPINGVKLNEQHAAELNNDLEIVEEEQEESNVLVGCDIIEEMPEDDMHMASHIPEDLYEVVEVQEQQQREEEKEEEVEELAQEDTSEEEQQPAATAARTRRPKPISDLLQCKICNKQLSTSNSFKYHMQLHGDAKPFECTICGESFKTRNAFDGHITTHDPNNPNTCNICGKFYRQASSLRTHMLAHKGVKPYQCTLCGKRLTQKSGYKKHMLTHTGEKPHTCDICHRSFRYSSNLIAHKRCHSQEKPHECQVCHKRSFANSSDLTRHMLVHSNERPFKCLDCGKTFKRQISLNVHMKSKKTAAMEESSLEYDEEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00517896;
90% Identity: iTF_00580937;
80% Identity: iTF_00575012;