Basic Information

Insect: Drosophila persimilis
Gene Symbol: salm
Assembly: GCA_003286085.2
Location: NW:6084076-6095971[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 4.5e-06 0.00025 21.0 0.9 1 23 441 463 441 463 0.98

2 7 9e-06 0.0005 20.0 2.1 1 23 469 491 469 491 0.98

3 7 0.015 0.85 9.9 1.5 2 23 884 905 883 905 0.98

4 7 6.4e-08 3.6e-06 26.8 0.5 1 23 911 933 911 933 0.98

5 7 0.0002 0.011 15.8 2.3 1 23 943 965 943 965 0.98

6 7 0.026 1.5 9.1 2.9 2 23 1386 1407 1385 1407 0.97

7 7 2.5e-08 1.4e-06 28.1 1.3 1 23 1413 1435 1413 1435 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	4.5e-06	0.00025	21.0	0.9	1	23	441	463	441	463	0.98
2	7	9e-06	0.0005	20.0	2.1	1	23	469	491	469	491	0.98
3	7	0.015	0.85	9.9	1.5	2	23	884	905	883	905	0.98
4	7	6.4e-08	3.6e-06	26.8	0.5	1	23	911	933	911	933	0.98
5	7	0.0002	0.011	15.8	2.3	1	23	943	965	943	965	0.98
6	7	0.026	1.5	9.1	2.9	2	23	1386	1407	1385	1407	0.97
7	7	2.5e-08	1.4e-06	28.1	1.3	1	23	1413	1435	1413	1435	0.99

Sequence Information

Coding Sequence: ATGAAAAATCACCTGTCCAACGTGCTGTGTGCAATGCGTAGTGACTTCAAGGATAATCACCAGGAGACCATCAATAAAATGATACAATTTGGCACAGTGAAATATGGCATTGTCAAACAGCTGAAGGATCGCGCTCGAAGCGCCGACAAAGACACTGGCAGCGATCAGGAGGAGAATGGAGCCTGCTCGCCGCTGACCACGGCCACTGCCACGACCACGGCCAGTCCCAGCCGCAGTCCCGAGCCCGAGGAGGatcaggagcagcagctgaaaCACTCGGAGACCATcgaggacaacaacaacaaggtGCTGGTCATGACAAAGCCGGACTCCGAGCCGGAGGCCCACTCGAGGCCGCAGTCACCGCTGGCCCTGACCAACACCGAAGAGGCGGCCACGGCGGCCAGTCCGGCGGCAGTGGCCCCCGAGAAGGACATCGAAGTGGATGTGGAGATGCCAGAGACAAGGACGGCGGCAGGAGAGGCTGTGGGGGCCACACCTGTGACCCTGGAGGCCATCCAGAACATGCAGATGGCCATTGCCCAGTTTGCGGCCAAGACGATTGCCAACGGATCGACGGGGGCGGACAACGAGGCGGCCATGAAGCAGCTGGCCTTCCTGCAGCAGACGCTCTTCaatctgcagcagcagcagctcttcCAGATCCAGCTGATCCAGCAGCTGCAGTCGCAGCTGGCCCTCAACCAGGCCAAGCAGACGGACACGGACGAGGCCCAGGAGGAGGATGGGGATGccgatgcggatgcggatgggGAGCCAGAGGAGCGCGACGATGGCGAGACGGACACgtacgaggaggaggagcgcaTTGCCGACATGGAGCTGCGCCAGAAGGCGGAGGCCCGCATGGCCGAGGCCAAGGCCCGCCAGCATCTGATCAATGCGGGAGTGCCCCTCAGGGAGTCCTCCGGATCGCCCGCCGAGTCCCTGAAGCGCCGCCGagaacaggagcaggagcaggaggaggctgccgctgctgccgcggCCATGAGGCGCCCGCCCACCAGCCGCCGCCTCAGCTCGGAGGCGGCGGGCCGGCACAAGGAGAACGCCCAGGAGGCGCTGGCCAAGCTCAAGGACATGGAGAACATGCCGCTGCCGTTCGGCTCCGACCTGGCCTCGAGCATCATCACGAACCACGACGACCTGCCGGAGCCCAACTCGCTGGACCTGCTGCAGAAGCGCGCCCAGGAGGTGCTCGACTCCGCCTCGCAGGGCATCCTGGCCAACAACATGGCCGACGACTTCGCCTTCGACAAGGCCGGCGAGGGCAAGGGCCGCAACGAGCCGTTCTTCAAGCACCGCTGCCGGTACTGCGGCAAGGTCTTCGGCTCCGACTCCGCCCTGCAGATCCACATCCGCTCGCACACCGGCGAGCGCCCCTTCAAGTGCAACGTCTGCGGCAGCCGCTTCACCACGAAGGGCAACCTCAAGGTCCACTTCCAGCGGCACGCCCAGAAGTTCCCGCACGTGCCCATGAACGCCACGCCCATTCCGGAGCACATGGACAAGTTCCATCCGCCGCTGCTCGACCAGATGTCGCCCACGGACAGCTCGCCCACCCACTCGCCGGCGCCGCCCGCGGCCACGTCCGGGAGCTCCGCTGCCGCCCCGCCGCCCCTGCCGTTCGCCTCGAGCCCCGCCTTCCCGGGCCTGCAGGGTCTCTACCGGCCGCCCATGGAGATCCTCAAGTCGCTGGGCGCCGCCGCAGGCGGTCCGCATCCGTTCTTCCCCCAAATGCCGGGCCTGGGCGCCGCCCTGAAGCACTCCCATGCCCACTCCCACGACATGCCCACGGATCTGCGCAAGTCCTCGGGTCCGAGTTCGCCCCGCCCccagggggaggaggaggaggaggaggaggacgaggagaTGCTGTCCGGCCAGATGCCCGTCAAGACGGAGCTCATGGAGGAGGacaaggaggaggaggaggcgaaCGAGGAGCAGGACACCTCTGCCCACGATCGctcggagacggagacggagccCGAGCCGGAGCCCCTGCCCCTGGAGGTGCGGATCAAGGAGGAGCGCCTCGAGGAGGAGTCGTCCGAGCAGCACCAGTCCCAGGACCCCGAGGAGGAGCACCTCGAGGTGCGTCGCACGCCCTCGCCGCGCGTCCGATCCCCGCCCGTGAATCACCATCGCAGCCACCACCACGCCCACCACGGCCACCACGCCCACCACGCCCATCACGGCTACCCGCCGGTGGTGCAGCCCATCCAGCCGCCGGCCCTGATGCACGCACAGCCCTCGCCCGGCTCCCAGTCGCACCTGGACCACCTGCCCACGCCCGGCCAGCTGCCGCCGAGCATGCCCCACCGGGAGGACTTCTTCGCGGAGCGTTTCCCGCTCAATTTCACGACCGGAAAGACGCTCTCGCCGGAGCACAACTCCCCCATCCGCTCGCCGGCCGCCGGCGGACCCCATCCGCACGGGCATCCGCACCACGGCCACATGGCGCGCTCGCCCTTCTTCAATCCGATCAAGCACGAGATGGCGGCGCTGCTGCCGCGGCCCCACAGCAACGACAACTCGTGGGAGAACTTCATCGAGGTGTCGAACACCTCGGAGACGATGAAGCTCAAGGAGCTGATGAAGAACAAGAAGATCAGCGACCCCAACCAGTGCGTGGTCTGCGACCGGGTGCTCTCCTGCAAGAGCGCCCTCCAGATGCACTACCGGACGCACACGGGCGAGCGGCCGTTCAAGTGCCGCATCTGCGGACGGGCCTTCACCACGAAGGGCAACCTGAAGACGCACATGGCCGTGCACAAGATCCGGCCGCCGATGCGCAACTTCCACCAGTGCCCCGTCTGCCACAAGAAGTACTCGAACGCCCTCGTCCTGCAGCAGCACATCCGCCTGCACACGGGCGAGCCCACGGACCTCACGCCCGAGCAGATCCAGGCGGCCGAGATCCGCGATCCGCCGCCATCCATGATGCCCGGCCACTTCATGAATCCCTTTGCGGCGGCCGCCTTCCACTTTGGCGCCCTGCCGGGCGGACCGGGCGGACCGGGCGGCCCCCCGGGCGCCGGAGGAGCCCTCCACGGGCCGCACAACGGAGCCCTCGGCTCGGAGTCGTCGCAGGGGGACATGGAGGACAACATGGACTGCGGGgacgactacgacgacgacgtgTCCTCGGAGCATCTGTCCAACAGCCACCTCGACCAGGAGGGCGCTGGATCCGGGGAGCGTCCGCGCTCGGGCGACGACTTCAAGTCGCTGCTCTTCGAGCAGAAGCTCCGCATCGACGCCACGGGCGTGGTCAACACCCATCCGCCCGCCCGGCCCCGCTCCTCCGCCTCCAGCAACGCCAACTCCGTGGGATCCGCCTCGGCGCCCACCAGCCCCACCTCCCAGTCGCACCTGGCCGCCAAGCCGAGCTCCTCGTCCACGCGGGCCAGCAGCCCGGCCCGCTCGGAGGCGTCGCAGGGCGCGCTGGACCTCACGCCCCGCGCGGCCCCCCAGCCCCCGCCGGcggcctccgcctccgcctcggCCTCCTCGTCCAGCTCCCGCTCGCCGCTGCTGCCCAAGGAGAAGCCCATCAGCCCGCCCGGCCTGCCGCAGTCGGCCCGGAGCCCGCCCAACGGACCCCCTCCGCCGCCCTCGATGCTCTCCTGctcgcccctgcccccgtCGGTGGCCATCGACTGCCTGCCCCCGGGGCTGCAGCACcacctgcagcagcagcaccagcacctcatgcagcagcaggcggccgtggcggcggcggcggcggcccagcaccaccaccaccagatGCAGCAGCACGCGGCCGCCCTGCACCAGCACCAGGAGCAGCTGCGTCGCGAGGCCCAGGAGGCGCAGCAgaaggcggcggcggcggcggcagcggcggccgcAGCAGCCCAGCGCCAGACCTCGCCCCAGCCCCCGTCCCGCGGCGGCAGCGATGTGGCAGGAGTCGGGCCGGCGGGTCcgcccaatcccaatcccctGATGGGCGCCCGTCCGCCCTTCGGCATGTTCCCCAATCTGCCGCTCTTCCCACCCTCCACGACCCAAAACATGTGCAACGCGATGAACCAGATCGCCCAGTCGGTGATGCCGGCGGCGCCGTTCAATCCGCTGGCCCTCAGCGGCGTGCGCGGCAGCACCACCTGCGGCATCTGCTACAAGACATTCCCCTGCCACTCGGCCCTCGAGATCCACTACAGGAGCCACACCAAGGAGCGGCCCTTCAAGTGCAACATCTGTGATCGCGGCTTCACCACCAAGGGCAATCTGAAGCAGCACATGCTGACACACAAGATCCGGGACATGGAGCAGGAGACCTTCAGAAATCGTGCAGTAAAGTATATGAGTGAATGGAACTCTGATCGCGAATAA
Protein Sequence: MKNHLSNVLCAMRSDFKDNHQETINKMIQFGTVKYGIVKQLKDRARSADKDTGSDQEENGACSPLTTATATTTASPSRSPEPEEDQEQQLKHSETIEDNNNKVLVMTKPDSEPEAHSRPQSPLALTNTEEAATAASPAAVAPEKDIEVDVEMPETRTAAGEAVGATPVTLEAIQNMQMAIAQFAAKTIANGSTGADNEAAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLALNQAKQTDTDEAQEEDGDADADADGEPEERDDGETDTYEEEERIADMELRQKAEARMAEAKARQHLINAGVPLRESSGSPAESLKRRREQEQEQEEAAAAAAAMRRPPTSRRLSSEAAGRHKENAQEALAKLKDMENMPLPFGSDLASSIITNHDDLPEPNSLDLLQKRAQEVLDSASQGILANNMADDFAFDKAGEGKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPTDSSPTHSPAPPAATSGSSAAAPPPLPFASSPAFPGLQGLYRPPMEILKSLGAAAGGPHPFFPQMPGLGAALKHSHAHSHDMPTDLRKSSGPSSPRPQGEEEEEEEDEEMLSGQMPVKTELMEEDKEEEEANEEQDTSAHDRSETETEPEPEPLPLEVRIKEERLEEESSEQHQSQDPEEEHLEVRRTPSPRVRSPPVNHHRSHHHAHHGHHAHHAHHGYPPVVQPIQPPALMHAQPSPGSQSHLDHLPTPGQLPPSMPHREDFFAERFPLNFTTGKTLSPEHNSPIRSPAAGGPHPHGHPHHGHMARSPFFNPIKHEMAALLPRPHSNDNSWENFIEVSNTSETMKLKELMKNKKISDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPPSMMPGHFMNPFAAAAFHFGALPGGPGGPGGPPGAGGALHGPHNGALGSESSQGDMEDNMDCGDDYDDDVSSEHLSNSHLDQEGAGSGERPRSGDDFKSLLFEQKLRIDATGVVNTHPPARPRSSASSNANSVGSASAPTSPTSQSHLAAKPSSSSTRASSPARSEASQGALDLTPRAAPQPPPAASASASASSSSSRSPLLPKEKPISPPGLPQSARSPPNGPPPPPSMLSCSPLPPSVAIDCLPPGLQHHLQQQHQHLMQQQAAVAAAAAAQHHHHQMQQHAAALHQHQEQLRREAQEAQQKAAAAAAAAAAAAQRQTSPQPPSRGGSDVAGVGPAGPPNPNPLMGARPPFGMFPNLPLFPPSTTQNMCNAMNQIAQSVMPAAPFNPLALSGVRGSTTCGICYKTFPCHSALEIHYRSHTKERPFKCNICDRGFTTKGNLKQHMLTHKIRDMEQETFRNRAVKYMSEWNSDRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00474701;
90% Identity: iTF_00474000; iTF_00481049; iTF_00580976; iTF_00471838;
80% Identity: -