Basic Information

Insect: Drosophila athabasca
Gene Symbol: salm
Assembly: GCA_008121215.1
Location: CM017794.1:12319431-12329611[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 4e-06 0.00027 21.0 0.9 1 23 462 484 462 484 0.98

2 7 7.9e-06 0.00054 20.0 2.1 1 23 490 512 490 512 0.98

3 7 0.013 0.91 9.9 1.5 2 23 894 915 893 915 0.98

4 7 5.7e-08 3.8e-06 26.8 0.5 1 23 921 943 921 943 0.98

5 7 0.00017 0.012 15.8 2.3 1 23 953 975 953 975 0.98

6 7 0.023 1.6 9.1 2.9 2 23 1387 1408 1386 1408 0.97

7 7 2.2e-08 1.5e-06 28.1 1.3 1 23 1414 1436 1414 1436 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	4e-06	0.00027	21.0	0.9	1	23	462	484	462	484	0.98
2	7	7.9e-06	0.00054	20.0	2.1	1	23	490	512	490	512	0.98
3	7	0.013	0.91	9.9	1.5	2	23	894	915	893	915	0.98
4	7	5.7e-08	3.8e-06	26.8	0.5	1	23	921	943	921	943	0.98
5	7	0.00017	0.012	15.8	2.3	1	23	953	975	953	975	0.98
6	7	0.023	1.6	9.1	2.9	2	23	1387	1408	1386	1408	0.97
7	7	2.2e-08	1.5e-06	28.1	1.3	1	23	1414	1436	1414	1436	0.99

Sequence Information

Coding Sequence: ATGAAAAATCACCTGTCCAACGTGCTGTGTGCAATGCGTAGTGACTTCAAGGATAATCACCAGGAGACCATCAATAAAATGATACAATTTGGCACAGTGAAATATGGCATTGTCAAACAGCTGAAGGATCGCGCTCGAAGCGCCGACAAAGACACTGGCAGCGATCAGGAGGAGAATGGTGCCTGCTCGCCACTGACCACGGCCACCACCACGGCCAGTCCCAGCCGCAGTCCCGAACCCGAGGAGGatcaggagcaggaacagccgCAGAACCTGAAACACACAGAAAGGCCAGAGGCCGAGgccgacgaggaggaggaggaggagaccaTCGAGGATAACAACAACAAGGTGGTGGTCATGACCAAGCCGAGTTCCGAGGTGGAGGCCCACTCCAGGCCGCAGTCACCCCCGCCCCTCTCGCACACAACAAACACAGAAGAGGCCGCGACGGCGGCCAGTCCGGCAGCAGTGGCGCCGGAGAAGGACATCGAAGTGGATGTGGAGATGCCAGAGACAAGGACCTCCGCGGGAGCGTCGGCAGAGGGAcagggagtgggtgtgggtgccACTCCCGTCACCCTGGAGGCCATTCAGAACATGCAGATGGCCATCGCACAGTTCGCGGCCAAGACCATTGCCAATGGCTCCACGGGGGCGGACAACGAGGCGGCCATGAAGCAGCTGGCCTTCCTGCAGCAGACGCTCTTCaacctgcagcagcagcagctcttccAGATCCAGCTGATCCAGCAGCTGCAGTCGCAGCTGGCCCTCAACCAGGCCAAGCAGACCGAGGACGAAGCGGAGGCCGACCAGGAGGAGGATGGGGAtcaggatgtggatgtggagccAGAAGAGCGAGAGGATGGCGAGACGGACACgtacgaggaggaggagcgcaTTGCCGACATGGAGCTGCGCCAGAAGGCCGAGGCACGGATGGCCGAGGCCAAGGCCCGCCAGCATCTGATCAATGCGGGAGTTCCACTGAGGGAGTCCTCAGGATCCCCTGCAGAGTCCCTGAAACGCAGGAGAGACCAAGAacaggcggaggaggaggctgctgctgccatgaGGCGGCCCGTCACGAGTCGTCGCCTCAGCGCGGAGATGGTCGTCCACAAGGAGAACGCCCAGGAGGCGCTGGCCAAACTCAAGGACATGGAGAACATGCCGCTGCCCTTCGGCTCCGACCTGGCCTCCAGCATCATCACGAACCACGACGATCTGCCCGAGCCCAACTCCCTGGACCTGCTGCAGAAGCGCGCCCAGGAGGTGCTCGACTCCGCCTCCCAGGGCATCCTGGCCAACAACATGGCCGACGATTTCGCCTTCGACAAGGCCGGCGAGGGCAAGAACCGCAACGAGCCGTTCTTCAAGCACCGCTGCCGGTACTGCGGCAAGGTCTTCGGCTCCGACTCCGCCCTGCAGATCCACATCCGGTCGCACACGGGCGAGCGCCCCTTCAAGTGCAACGTCTGCGGCAGTCGCTTCACCACGAAGGGCAACCTCAAGGTCCACTTCCAGCGGCACGCCCAGAAGTTCCCGCACGTCCCCATGAATGCCACGCCCATTCCGGAGCACATGGACAAGTTCCATCCGCCGCTGCTCGACCAGATGTCGCCCACGGACAGCTCACCCACCCACTCCCCGGCGCCGCCCTCGGCTCCGTCTGGGAGCACTGCTGCAGCCCCGCCTCCGATGCCATTCTCCTCGAGCCCCGCCTTCCCTGGACTGCAGGGCCTCTACCGCCCGCCCATGGAGATCCTCAAGTCTCTGGGAGCCGCTGCAGGAGGTCCGCATCCGTTCTTCCCCCAGATGCCAGGCCTGGGCGCCGCCCTGAAGCACTCCTCCTCCCACCCCTCCCACGATATGCCCACGGATCTGCGCAAGTCCTCGGGTCCGAGTTCTCCCCGCccccaggaggaggaggaggacgaggagatGCTGTCTGGCCGGATGCCCGTCAAGACGGAGCTCATGGAGGAGgacaaggaggaggagcagaacgAGGAGCAGGAAACCTCGGCCAACGATCGCTCGGAACCGGAACCCGAACCggagccactgccactggaggTGCGGATCAAGGAGGAGCGCATCGAGGAGGAGTCATCGGAGCAGAACCACAACcaggaacaggaggaggagcaccTGGAGGTGCGTCGTACACCTTCGCCTCGCGCCAGATCCCCGCCAGTGAATCACCATCGAAGCCACcatcagcaccaccagcacggCCACCATGGCTATCCGCCCGTGGTGCAGCCCATCCAGCCCCCCGCCCTGATGCATCCACAGCCATCGCCTGGATCGCAGTCGCACCTGGATCACCTGCCAACGCCCGGACAACTGCCACCGAGCATGCCCCACCGGGAGGACTTCTTCGCGGAGCGTTTCCCCCTCAACTTTACGACTGGGAAAACACTTTCCCCCGAGCATAACTCCCCCATACGCTCCCCTGCCGCCGGGGGACCCCATCCGCACGGTCATCCGCATCACGGCCACATGGCCCGATCGCCCTTCTTCAATCCCATCAAGCACGAGATGGCGGCCCTGCTGCCGCGGCCTCACAGCAACGACAACTCGTGGGAGAACTTCATCGAGGTGTCCAACACCTCGGAGACGATGAAGCTCAAGGAGCTGATGAAGAACAAGAAGATCAGCGACCCCAACCAGTGCGTGGTCTGCGATCGAGTGCTCTCCTGCAAGAGTGCCCTCCAGATGCACTACCGCACCCACACGGGCGAGCGTCCGTTCAAGTGCCGCATCTGCGGACGGGCCTTCACCACGAAGGGCAACCTGAAGACGCACATGGCCGTGCACAAGATTCGGCCGCCGATGCGCAACTTCCACCAGTGTCCGGTGTGCCACAAGAAGTACTCGAATGCCCTCGTCCTGCAGCAGCACATACGCCTGCACACGGGCGAGCCCACGGACCTCACGCCGGAGCAGATCCAGGCGGCCGAGATCCGCGATCCCCCGCCCTCCATGATGCCGGGCCACTTCATGAATCCCTTTGCCGCGGCCGCCTTCCATTTCGGCGCCTTGCCTGGTGGACCGGGTGGGCCCCCAGGGGCAGGAGGAGCCATGCATGGGGCGCACAACGGAGCCTTGGGCTCGGAGTCGTCGCAGGGGGACATGGAGGACAACATGGACTGCGGGGATGACTACGATGATGATGTCTCCTCGGAGCATCTGTCCAACAGTCACCTCGATCAGGAGGGAGGAGGATCCGAGCGTCCGCGATCGGGAGACGACTTCAAGTCGCTGCTGTTCGAACAGAAGCTCCGCATCGATGCCACGGGCGTGGTCAACACCCATCCCCCCGCCCGGCCACGCTCCTCCGCCTCCAGCAACGCCAACTCCGTGGGATCCACCTCGGCGCCCACCAGCCCCACCTCCCAGTCGCACCTGGCCACCAAACCCAGTTCTTCTTCCACGCGGGCCAGCAGCCCAGCGCGATCGGAGGCGTCGCAAGGAGCCCTCGACCTCACGCCCCGAGCGGCACCACAGCCTCCGCCAGCGGCCATCTCTGCCTCCTCGTCCAGCTCCCGCTCGCCCCTGCTGCCCAAGGAGAAGCCCATCAGCCCGCCCAGCCTGCCGCAGTCCGCCCGCAGCCCACCCAACGGACCTCCGCCCCCATCGATGCTCTCCTGCTCGCCCTTGCCCCCTTCGGTGGCCATTGACTGCCTGCCCCCAGGGCTCCAGCAccacctgcagcagcagcaccagcacctcATGCAGCAGcaagcggcagtggcagcggcagcggcggcacagcatcaccaccaccagaTGCAGCAGCATGCGGCCGCTCTGCACCAGCACCAGGAGCAGCTCCGTCGCGAGGCCCAGGAGGCACAGCAgaaggcggcggcagcggctgcagcagcagcagcagcccagcgCCAGACATCTCCCCAGCCGCCGTCTCGCGGCGTCAGCGatggggcaggagcaggagtcgGACCAGCGGGTCAGCCCAATCCTCTGATGGGTGCCCGTCCGCCCTTCGGGATGTTCCCCAATCTGCCGCTCTTCCCGCCCTCAACGACGCAGAATATGTGCAACGCGATGAACCAGATCGCCCAGTCCGTGATGCCGGCGGCGCCATTTAATCCGCTGGCCCTGAGCGGCGTGCGGGGCAGCACCACCTGCGGCATCTGCTACAAGACATTCCCCTGCCACTCGGCGCTGGAGATCCACTACAGGAGCCACACCAAGGAGCGGCCCTTCAAGTGCAACATCTGTGATCGCGGCTTCACCACCAAGGGCAATCTGAAGCAGCACATGCTGACACACAAGATCCGGGACATGGAGCAGGAGACCTTCAGAAATCGTGCAGTAAAGTATATGAGTGAATGGAACTCTGATCGCGAATAA
Protein Sequence: MKNHLSNVLCAMRSDFKDNHQETINKMIQFGTVKYGIVKQLKDRARSADKDTGSDQEENGACSPLTTATTTASPSRSPEPEEDQEQEQPQNLKHTERPEAEADEEEEEETIEDNNNKVVVMTKPSSEVEAHSRPQSPPPLSHTTNTEEAATAASPAAVAPEKDIEVDVEMPETRTSAGASAEGQGVGVGATPVTLEAIQNMQMAIAQFAAKTIANGSTGADNEAAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLALNQAKQTEDEAEADQEEDGDQDVDVEPEEREDGETDTYEEEERIADMELRQKAEARMAEAKARQHLINAGVPLRESSGSPAESLKRRRDQEQAEEEAAAAMRRPVTSRRLSAEMVVHKENAQEALAKLKDMENMPLPFGSDLASSIITNHDDLPEPNSLDLLQKRAQEVLDSASQGILANNMADDFAFDKAGEGKNRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPTDSSPTHSPAPPSAPSGSTAAAPPPMPFSSSPAFPGLQGLYRPPMEILKSLGAAAGGPHPFFPQMPGLGAALKHSSSHPSHDMPTDLRKSSGPSSPRPQEEEEDEEMLSGRMPVKTELMEEDKEEEQNEEQETSANDRSEPEPEPEPLPLEVRIKEERIEEESSEQNHNQEQEEEHLEVRRTPSPRARSPPVNHHRSHHQHHQHGHHGYPPVVQPIQPPALMHPQPSPGSQSHLDHLPTPGQLPPSMPHREDFFAERFPLNFTTGKTLSPEHNSPIRSPAAGGPHPHGHPHHGHMARSPFFNPIKHEMAALLPRPHSNDNSWENFIEVSNTSETMKLKELMKNKKISDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPPSMMPGHFMNPFAAAAFHFGALPGGPGGPPGAGGAMHGAHNGALGSESSQGDMEDNMDCGDDYDDDVSSEHLSNSHLDQEGGGSERPRSGDDFKSLLFEQKLRIDATGVVNTHPPARPRSSASSNANSVGSTSAPTSPTSQSHLATKPSSSSTRASSPARSEASQGALDLTPRAAPQPPPAAISASSSSSRSPLLPKEKPISPPSLPQSARSPPNGPPPPSMLSCSPLPPSVAIDCLPPGLQHHLQQQHQHLMQQQAAVAAAAAAQHHHHQMQQHAAALHQHQEQLRREAQEAQQKAAAAAAAAAAAQRQTSPQPPSRGVSDGAGAGVGPAGQPNPLMGARPPFGMFPNLPLFPPSTTQNMCNAMNQIAQSVMPAAPFNPLALSGVRGSTTCGICYKTFPCHSALEIHYRSHTKERPFKCNICDRGFTTKGNLKQHMLTHKIRDMEQETFRNRAVKYMSEWNSDRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00474701;
90% Identity: iTF_00575050;
80% Identity: -