Dper001082.1
Basic Information
- Insect
- Drosophila persimilis
- Gene Symbol
- -
- Assembly
- GCA_003286085.2
- Location
- NW:969231-971128[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00018 0.01 15.9 3.9 1 23 184 207 184 207 0.96 2 9 0.00014 0.0076 16.3 1.7 1 23 232 255 232 255 0.98 3 9 0.01 0.58 10.4 0.1 1 23 270 293 270 293 0.97 4 9 7.8e-05 0.0044 17.1 3.6 3 23 298 318 297 318 0.97 5 9 0.0036 0.2 11.8 4.8 3 23 326 348 325 348 0.91 6 9 2.1e-06 0.00012 22.0 2.1 1 23 354 376 354 376 0.98 7 9 7.4e-06 0.00042 20.3 0.9 3 23 384 404 382 404 0.98 8 9 0.0003 0.017 15.2 2.8 1 23 410 432 410 432 0.95 9 9 0.00014 0.0079 16.3 0.0 1 23 438 460 438 460 0.98
Sequence Information
- Coding Sequence
- ATGCTAAAGAGCCTCAAAGCGGACACCTACGCCGGCATGGCCAATGCCAAATGCGGCGAGATCTACTTCCAGAGCCTGGACAGTTTCCGCATCgattgtgccttttgtgaaATGAAGAGCTTTGTGTTTAATGACTTTCTGCTGCACGTCCAGAACGTCCACTTTGAGAACGGCCTGCTCAGGACAGAGCTGGAGGAGTTCAAGGAGGAGAAAGAACCGTCGGAGGCCTCGCCAGTTCCCACTGAGCCACAAGTAAACACCTTTGCGTGGCACAAAATCGAACATGATAATGATGAAGATGACCTGCGCAGTGACAGTGAGTATGAATTTCTGACGGATGAGGAGAACAATGATCCCGATCCCGTCAGGGTCATTCTGAAATGGGATAATTCCAATGCAACCACAATCGACTCTTCGCGCCAAATGCGCTCTGCCAAAGTGGACTACAAGGAAGAGTCCGACCCAGAGGGCGACGACTGTACAATCGACCTGGATATGGATATAGATCTAGATCTGGACAATCCCGACGAGTCGACGACCAAGAAACCACATTCCTGCCCGCACTGTGACAAGACCTATCAGGAGCAGAAAACTTTGGATCGGCACATGGCACGCCAGCACAAGCCCGTGGATCCCGAGGTGGAAGCAGACTACGGGATGTGCCAGATACTTGATTCGAGACCTCAGCCAGTATACAAGTGCGAGCAATGTGACAATACATTCTTCACAAAGCTAACGTTGGTGGTTCATATGAACCGGTACCATAAGATCAGACGCGAGGCAGCGATCTCGGCAGCATCCCCATCGTTCACTTGCGTGGAATGCGATACAGAGCTGCCGCGCCTGCGTCTGCTCGACGAGCACATGCTGAAGGTACACGGCGGACCAGCGTGCGCGATCTGCAAACGGCGCTACAAAACGCGGCACGAGCTCAAGCGCCATCAGCTAAGGCACAACAGCGAACGGAACGTGCTGTGTTCGCATCCCGGCTGCGGAAAGACCTTCTTCACCAAGCGCCACATGCGCAATCACTCCAAGGTCCACACGGATGAGAAGAACTTCATTTGTGAGAACTGCGGCTACAGCTGCCGCAACAAGGAGACGTTGCGCGTTCACATCCGCAGTCACACGGGCGAACGTCCGTTTGGGTGTAAGGTGTGCGACAAGCGATTCCCATCTCATTCGGGCCTGCGCGAGCATATGGCCATGCACTCGACAGATCGGCCGTATGTGTGCAATGTCTGCAATGCCACCTTCTCCCGCCAGAAGGGACTGTACCATCACAAGTTCCTGCACTCGGATACAAAGCAGTTTGTCTGCAAGCTGTGCGGAAATGCCTATGCCCAGGCGGCCGGATTGGCTGGTCATATGCGCAAGCATCGCAGCGAGGAGCTCAACGGTGGATCGTAG
- Protein Sequence
- MLKSLKADTYAGMANAKCGEIYFQSLDSFRIDCAFCEMKSFVFNDFLLHVQNVHFENGLLRTELEEFKEEKEPSEASPVPTEPQVNTFAWHKIEHDNDEDDLRSDSEYEFLTDEENNDPDPVRVILKWDNSNATTIDSSRQMRSAKVDYKEESDPEGDDCTIDLDMDIDLDLDNPDESTTKKPHSCPHCDKTYQEQKTLDRHMARQHKPVDPEVEADYGMCQILDSRPQPVYKCEQCDNTFFTKLTLVVHMNRYHKIRREAAISAASPSFTCVECDTELPRLRLLDEHMLKVHGGPACAICKRRYKTRHELKRHQLRHNSERNVLCSHPGCGKTFFTKRHMRNHSKVHTDEKNFICENCGYSCRNKETLRVHIRSHTGERPFGCKVCDKRFPSHSGLREHMAMHSTDRPYVCNVCNATFSRQKGLYHHKFLHSDTKQFVCKLCGNAYAQAAGLAGHMRKHRSEELNGGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00481026;
- 90% Identity
- iTF_00580955;
- 80% Identity
- -