Basic Information

Insect: Drosophila pectinifera
Gene Symbol: -
Assembly: GCA_008042775.1
Location: VNKC01000868.1:5315-9231[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7.8e-05 0.0055 16.9 0.4 1 23 173 196 173 196 0.96

2 14 0.0015 0.11 12.9 3.1 2 23 245 267 241 267 0.90

3 14 0.0078 0.55 10.6 0.2 1 23 362 385 362 385 0.92

4 14 0.018 1.3 9.5 3.4 2 23 434 455 433 456 0.94

5 14 0.0018 0.12 12.7 0.6 1 23 526 549 526 549 0.92

6 14 6 4.2e+02 1.6 0.1 2 14 568 580 567 592 0.83

7 14 0.0006 0.043 14.1 3.3 2 23 600 622 600 622 0.96

8 14 0.03 2.1 8.8 0.6 1 23 718 741 718 741 0.95

9 14 4.5e-05 0.0031 17.7 0.3 1 23 775 798 775 798 0.93

10 14 0.0038 0.26 11.6 1.5 2 23 848 870 847 870 0.95

11 14 0.016 1.1 9.6 1.8 1 23 964 987 964 987 0.91

12 14 0.0019 0.13 12.6 1.4 1 21 1039 1059 1039 1060 0.95

13 14 3.1 2.2e+02 2.5 0.1 3 23 1092 1115 1090 1115 0.75

14 14 2.7 1.9e+02 2.7 0.3 1 12 1133 1144 1133 1157 0.72

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7.8e-05	0.0055	16.9	0.4	1	23	173	196	173	196	0.96
2	14	0.0015	0.11	12.9	3.1	2	23	245	267	241	267	0.90
3	14	0.0078	0.55	10.6	0.2	1	23	362	385	362	385	0.92
4	14	0.018	1.3	9.5	3.4	2	23	434	455	433	456	0.94
5	14	0.0018	0.12	12.7	0.6	1	23	526	549	526	549	0.92
6	14	6	4.2e+02	1.6	0.1	2	14	568	580	567	592	0.83
7	14	0.0006	0.043	14.1	3.3	2	23	600	622	600	622	0.96
8	14	0.03	2.1	8.8	0.6	1	23	718	741	718	741	0.95
9	14	4.5e-05	0.0031	17.7	0.3	1	23	775	798	775	798	0.93
10	14	0.0038	0.26	11.6	1.5	2	23	848	870	847	870	0.95
11	14	0.016	1.1	9.6	1.8	1	23	964	987	964	987	0.91
12	14	0.0019	0.13	12.6	1.4	1	21	1039	1059	1039	1060	0.95
13	14	3.1	2.2e+02	2.5	0.1	3	23	1092	1115	1090	1115	0.75
14	14	2.7	1.9e+02	2.7	0.3	1	12	1133	1144	1133	1157	0.72

Sequence Information

Coding Sequence: ATGGAAGGCATGGATCTTTGGACGTCGATGTTCTCCTCCGAGTTCGAGGACGGGGAGCCGGAAGGTGGCGATGGGGAGCCGCTGGAGGGTGAAGATGGCGCGCAGTACGGCAACGGAAATGGCGATTTTCTCGACGACACGGAAATTCTGGAAGCTGGGGATGGTGTAGACGACCTGCTGGATGGCGAGGACGATGAGcgggaggaggacgacgaaaACAGGAAACTGGATGGCCAAAAGGGTCCAAAGGGACCGGAGCCGGACGACGATGCTCTCTTCGACTTTGAGTTAGAGCCAATTGTGAGTATTGGGGAGCCGCAGCCGACGGTTCTGGCTCCCGCCGGTCCGATTGGCGCCCAAGTACGGCCCGCCCTGCAGCAGCGACACTCATTGCCCCCAGTGAGTCGGCCGCGGTCCGAGATGCGACCCATCGGGTTGCCCGTTCGGCCAACCACCTCGCAGATCAACGCCACCGATGAGAACGGCGTGCCCATCAACTACGAGCTGGGCGTGGTTTACATTTGCCCGGCCTGCGGCGGAGAGTTCCGGCAGCAGGATCACTGGAAGCGGCACATGAATCAAATCCACAGGTACAACACACTGCGTGGCCTCAACTTTGCGCCGCTGGACAAGCTTTACCAGCGCTGCAAAGAGTGCCACAAGCGAATAGCTATGCACAGCCGGGAGAACTTGCTGAAGCACAAGTTCACGCACCTTCCGTTCCGGTGCACCAAGTGCTACATCTGCAAGCGGGAGTACAAATACAGGCAAGATCTAATGGTGCACCTGCGTATGGTCCACTGCGACGAAGTGGTGGCCATGATGCGGGAAGGTTACAACGCGGCCGGACGCAAGACCCGAGTGCGGGAATCGCGCACCGAGCAAATGCGGCGGGAGGAGAGCTTCCTCGAGGATGAGGACTTAGATCGCATCGAGGTACGGAACGAGGTGCTCGAACCGGACATTGACGAATCTGGAGCCACGGAGCATACGCCGCTGGCGCCACCGGTGGAGGAGGTGCCCAATAAGAAGCGGCCCGGcagtggaggagcagctgccgaGCTGTGCGAAGACTACATCCACTTCATGTGCCCCGACTGCGGCACCGAATGCGACACCCTGGCCCAGTGGAGCCAGCACATCGAGTTTGTCCATGACTACGTGAGCCGGCGTGGCCTCAACTTTCGGAGTGTCGACATGCAGATGCAGTGTCTCGAATGCAAAAAGATTGTTATCCCCAACACCATCAAATCGCTGCGCTCCCACAAATTCAGTCATTTGTCGCATCCTGAGTGGCTGCGCTGCAAGCTCTGCTACAAGGGCTACACAGATCATCAGGAACTTGTTATGCATCTGCTGAAGCACCATCATCTGGATACACTGATATCGGATGACCCCGAGCAAGAAGAGGAGAATACTTCATTGACCATTCCGGGCGATGGGAATGAATGCGAAAACAATGGAAATGACGAGGGAAACGGCGCTGCCTTAGACGAGGATTCGCCCTACTTTGAAGACGCTCCTAGACGCGGCGGTCGTATCAGCAGCGACGACATTTTCGAGCCACACATCGACTACCTCTGTCCGCAGTGCGGCAAGGAGTTCATGGAGAAGAAGCACTGGCGCACCCACGTGGTCATGGCGCATAGCATGAACGATTTGTCCAAGCTGAATTTCGAGATGATCAACGAACGGCAGCTAAAGTGCACCGAGTGCGAGAAGATCATCACGAATGCGTATGGAATACAAAATGCCCAGCAGCACAGGATCACCCATCTGCCATTCAAGGCGTATGCCAGATGCCGAAAGTGCCACAAGTCCTACACGGACAGAAAGGGTCTCGTCAAGCACTTGGCTACCTATCATCGCATCGGCTGTGATCCTCGAAAGTCCGGAGGAGGTGGTCCAGGTGCAGCAACACCTCTACCCATGCCGACTACACCCAAGCAGCCGCGCAAGCAGATCGTCACAGTGGCTAATGAGACCTACGAGATTATCTACCTGGACGATGTGGAGCAGAACAGCGTGGATGAGGAGAATGACTTTGGGGAGCAGATGCTGGCTGACGAGGACGAATATCCGATTGTTCCGCCACcgcaacagcggcagccactgccgccgcgACCATCGTCGCAGAACAATCAACAGCGTTACAAGTGCGTCCACTGCAGTACTCTGTTTCCAACCCAAGTGGCCGTTCGGATACACATCAGTGAGAAGCATTGCCGGAAGCCCAATCAGATGGGAAGAAGACATCGGCATTCGCTGTCGAACTCTGGAGGGGCGGAGGCCGGCGTTAATACTGTGGAGCAAAACTACATCTTCCTGTGCCCATCCTGCGGCAAGGAGTACAAGACGCAGTACGAGTGGCGCCGTCACATCAACGAGGAGCACAACTTTGACAAGAGGAACTATCTGAACATGCGGCAGTTGGATAAATATCGCTACCAATGCACGCAGTGCAAGGACATTGTTTGCAACTCGAAGCTGAAGGGTCTGCAGGACCACCACTTCCGTCACCTGCCATACCGCCTATATCTCAAGTGCCTAGTCTGCGGCACCTGCTACAACCACAAGCCGAACATAGCTGCACATCTAAGAGCCCGCCATAACATTTTCGATAGGGAGGCGCCCCTGATGGTCACCAAGCCGAAACACGCCTACAGTCGCGGTAAGGATAGCGATAGAGAGAAGACCGCGCTACCCTCTCCCGCACCGGCAGCGGGATCTCCACCCGGCTGCTCCACCTCGTCTGTTGCGCCCCCTACGCCTGTGACCAATCGCACCCTAAAGCCGCAGCCCGGTGATCTGCCCACACGACCCGCTGGCCTCAACACCCTGGAGGACAGCATCTCGTACCATAATGCCGTGGATATGGACTTCATCACGTACTTCTGCCCGAAGTGCAACCAGAACTTTGACTCGCATGCCTTCTGGCGCAAGCACATCGTGGAACAGCACAACTTCAACAGCCGCGAGGGTCTGAACTTCCGTCAGATCGACAACCATCACTACCTGTGCCTGGAGTGCTATAAGCGCGTGACTGTGACACACACCAAGGGCGCCATTGGTCAGCTGCAGTCGCACAAGTTCCGGCATCTGCCACATCGCTCCTTTAAGTGTCTGACCTGTGACGCATCCTTTGTGCGCAAGCAAATGTTCTTCAAGCACCTGAATCGTGACACCAACCGATGTGACAATCGTCCCCAAAGGGAGTTGGATGACGAAGAGCCGAGCGAGGACACGCAGCTGGGCTCCATTTACCACCTGGCGTGTCCGCAGTGCGGCGATGACTTCAATACCCCCAGCAGGAAACAGTGGCGCGAGCACATCAATGTCTTTCACGGCCTGGCCAAGTTGGACCTTCTGCACATGCACAAGGTCAGCGAGGATCTCTATCGCTGCCAAGACTGTGACGAAGAGCTGCAGACTAACCGGCAGTGGGTGCTACAATACCACCGTTTCCAGCATCTCCCACAACCAGCCTATATTCGATGCCAACTGTGCGAGCAGAATAGTGAGCGGGATGCGACAGTGGGATCCGGGATGCATAGCCTGCGagaactgcagcagcatctcCGCAAGCACCATCCAACGGTGGGCGAAAACGAGATGATAGCGATCCGCGACCAGATTGcccaggaggagaaggagcaggaggagacaATGGGCCAGCCCGCAGACGAAGAAGACAACCAGACAGGTGGCCAGGACTCAGGTCCCTACATGCCGCTTCCGCCGCATTTACTGGACGATGGAGACGACGTGGAGTTTGAGGACCAGTATCTGCTGGGGTAG
Protein Sequence: MEGMDLWTSMFSSEFEDGEPEGGDGEPLEGEDGAQYGNGNGDFLDDTEILEAGDGVDDLLDGEDDEREEDDENRKLDGQKGPKGPEPDDDALFDFELEPIVSIGEPQPTVLAPAGPIGAQVRPALQQRHSLPPVSRPRSEMRPIGLPVRPTTSQINATDENGVPINYELGVVYICPACGGEFRQQDHWKRHMNQIHRYNTLRGLNFAPLDKLYQRCKECHKRIAMHSRENLLKHKFTHLPFRCTKCYICKREYKYRQDLMVHLRMVHCDEVVAMMREGYNAAGRKTRVRESRTEQMRREESFLEDEDLDRIEVRNEVLEPDIDESGATEHTPLAPPVEEVPNKKRPGSGGAAAELCEDYIHFMCPDCGTECDTLAQWSQHIEFVHDYVSRRGLNFRSVDMQMQCLECKKIVIPNTIKSLRSHKFSHLSHPEWLRCKLCYKGYTDHQELVMHLLKHHHLDTLISDDPEQEEENTSLTIPGDGNECENNGNDEGNGAALDEDSPYFEDAPRRGGRISSDDIFEPHIDYLCPQCGKEFMEKKHWRTHVVMAHSMNDLSKLNFEMINERQLKCTECEKIITNAYGIQNAQQHRITHLPFKAYARCRKCHKSYTDRKGLVKHLATYHRIGCDPRKSGGGGPGAATPLPMPTTPKQPRKQIVTVANETYEIIYLDDVEQNSVDEENDFGEQMLADEDEYPIVPPPQQRQPLPPRPSSQNNQQRYKCVHCSTLFPTQVAVRIHISEKHCRKPNQMGRRHRHSLSNSGGAEAGVNTVEQNYIFLCPSCGKEYKTQYEWRRHINEEHNFDKRNYLNMRQLDKYRYQCTQCKDIVCNSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNIAAHLRARHNIFDREAPLMVTKPKHAYSRGKDSDREKTALPSPAPAAGSPPGCSTSSVAPPTPVTNRTLKPQPGDLPTRPAGLNTLEDSISYHNAVDMDFITYFCPKCNQNFDSHAFWRKHIVEQHNFNSREGLNFRQIDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPHRSFKCLTCDASFVRKQMFFKHLNRDTNRCDNRPQRELDDEEPSEDTQLGSIYHLACPQCGDDFNTPSRKQWREHINVFHGLAKLDLLHMHKVSEDLYRCQDCDEELQTNRQWVLQYHRFQHLPQPAYIRCQLCEQNSERDATVGSGMHSLRELQQHLRKHHPTVGENEMIAIRDQIAQEEKEQEETMGQPADEEDNQTGGQDSGPYMPLPPHLLDDGDDVEFEDQYLLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00609425;
90% Identity: iTF_00483241;
80% Identity: -