Dpec010720.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila pectinifera
Gene Symbol
RREB1
Assembly
GCA_008042775.1
Location
VNKC01001519.1:14355-21483[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.031 2.2 8.8 0.8 1 21 227 247 227 249 0.93
2 12 0.00029 0.02 15.1 0.2 1 23 259 281 259 281 0.98
3 12 7e-05 0.0049 17.1 7.3 1 23 287 309 287 309 0.98
4 12 1.8 1.3e+02 3.2 3.7 2 19 536 553 536 555 0.97
5 12 0.0072 0.51 10.7 0.1 1 23 706 728 706 728 0.97
6 12 1.1e-05 0.00075 19.7 0.7 1 23 738 760 738 760 0.99
7 12 0.00072 0.05 13.9 2.0 1 23 766 789 766 789 0.97
8 12 0.0026 0.18 12.2 2.0 1 23 1064 1087 1064 1087 0.95
9 12 7.4e-05 0.0052 17.0 0.3 2 23 1484 1505 1483 1505 0.97
10 12 0.12 8.8 6.8 6.3 1 23 1511 1534 1511 1534 0.97
11 12 0.0073 0.51 10.7 0.5 3 23 1746 1766 1744 1766 0.96
12 12 0.0012 0.085 13.2 4.8 1 23 1772 1794 1772 1794 0.99

Sequence Information

Coding Sequence
atgagcagcaacaacacagaCGTCGTGGAGATGGAGCGGAAGCGGAGAGAGTCCACTACGTCAGAGTCCTCTCTCGAGCATCTCGACCTCGGCCGAACGCCAAAGAAGCTCAGCGGCAGCGCCGGCGCAGCGCAGTCGACATCGACGCCGCACGAGGCGGTGGCAGCGACGTCGCGCAAGCGCAAGCTgcgccagctgcagcagctgcagcagcagcaccaccagcaccagcagagcCAGGATCTCCTCaccgacgaggacgaggacgaggaggaggcccgCCCCCTCAACCGCCACAAGCAGCGACGCGGCGCCGCTCAGggatcctcctccgcctccattGTGGTGGACTACTCCGCCGGCGACGCCAGCTCGCTGCGCAAGAAGTTCCGTCTCAATCGCTCGGCGGCCAGCCTCTCGGAATCGGGCTTCGTGGACGCCAGCAGCACCGCCCACAGCGGCTATCtgggcaacaacagcagcagcgccagcgccagcaccagcaccagtgCGGCAGTGCCTCCTGCCCCCGGAGCCAGTGGAGGAgccgctgcctccgccgcctcgagcagcagcaccagcacgagcagcaacagcagcagcggcggctccTCGCCGCAGGGCCTGTGCCTCTCCAGCGGCGAGTCGGGCATCGGGGCGGGCGATGAGCACATGAAGTACCTGTGCCCCATCTGCGAGGTGGTCTCCGCCACCCCGCACGAGTTCACCAACCACATCCGGTGCCACAACTATGCCAACGGCGACACCGAGAACTTCACCTGTCGCATCTGCTCCAAGGTGCTATCCTCGGCCTCATCCCTGGACAGACACGTGCTGGTGCACACCGGCGAGCGGCCGTTCAACTGCCGCTACTGCCACCTGACCTTCACCACCAACGGCAACATGCACCGCCACATGCGCACACACAAGCAGCACCAGACGGcgcagtcccagtcccactcccagtcccagtcgcagtcgcagtcccagtcgcagtcccagcagcagcgacgccagcagcagcagcagcagcagcagacacatcccgcccagcaacagcagcagcagcagcagcaggcgctggCCAGCTCCATGCCCGTGCGGGCGGAGAGCTACGAGAGCGACGCCAGCTGCTCCACGGATGTGTCCAGCGgcaacagccgcagccgcagcagcagctccctcctccacaacaacaacaacaacaactcccACAAGactaccaacaacaacaacagcaggagcggcaaggagctggagctggaggagatgcaggaggaggagttggaCAGCAAGCAACATCTGCGTCGCCTGAAGACGACCATCAACAACAATGTCATTGATGCAGTGAACCatgcggaggaggagggcggcgaggaggaggccgacGATGCCGAGGACGTGGCCATGCTGACCAGCACACCCGATGTGGCCACGCTGCTGGCAGGAGCCAGTGCCTCCGGCGCCGCCTCCCgttcgccctcgccctcgccacCCGGCTCGCCCGGCCTGCTCCTGAGCTGTCCCGCCTGCGGAGCCTCCGACTTCGAGAGCCTGCCCTCGCTGTGCGCCCACCTGGATGCCCGGCACTCGGACATACCGGCGAAGTGCCGGGACTGTGAGGTGATCTTTGCCAGCCATCGCCAGCTGCAGGCCCACTGCTGCCGGGGCTCGGCGTTGGGGGTGGGTCTGCCGCCGATGCTGGGCGCCAGCAGTTCGCCGCTGCACGCCGACGAGGacgccgaggacgaggaggaggcggaccacgaggatgacgaggagctggagcagaggCGCGACGACTTCTTCCACAAGCTCTATCTGAAGGGAACCGCGGGAGCGACGggtggcaacggcaacggcggcggcggcgggctcATCTCGCATCCGCCGTCGCCCATCAAGCACGAGCCGGCGGACAGCAAGGACCTGGCCGACATACAGAGCATCCTGAACAtgaccagctccagctgcaccAGCAGCTTCCTGCGCAACTTCGAGCAGTCGGTGAACACGCCCAGCTCCAGCCAGTACAGCCTCGATGGCCGcgaccaggaggaggaggcccaggACGCCTTCACCTCGGAGTTCCGCCGGATGAAGCTGCGCGGCGAGTTCCCCTGCAAGCTCTGCACCGCCGTCTTTCCGAATCTGCGCGCCCTCAAGGGCCACAACCGGGTCCACCTCGGAGCGGTCGGCCCCGCCGGCCCCTTCCGCTGCAACATGTGCCCCTACGCCGTCTGCGACAAGGCGGCGCTGGTGCGGCACATGCGCACCCACAACGGCGACCGGCCCTACGAGTGCGCCGTCTGCAACTACGCCTTCACCACCAAGGCCAACTGCGAGCGGCACCTGAGGAACCGCCATGGCAAGACCAGCCGGGAGGAGGTGAAGCGGGCCATCGTCTACCATCCCGCCGAGGATGCCGGCTGCGAGGACAGCAAGTCGCGGCTGGGCGAGGACCTGGCCGACCTGAGCTTCCGCTCGATCAGTCccacgccgccgccaccgctggccgagagcagcagctcccagctGAAGCACATGCTCAtggccgagcagcagcacctccaCCAGCCGGTGGCGCCGGCCCAGCCGCCGCTGAAGATCCAGGTGAAGAGCCTGGACCAGCTGGTGGACAAGAAGCCGGCGGCAGCGCCTCAGCAGCCCCTGCTGGCGGAGAAGGGACCTGGATCCGCCCTGGACTTCAGCATGGATGTGCTGGATCTCAGCAAGAAGCCAACGGGTGCAGCCACCACCCCGACGCCCACTCCCACGCCCGCGCTCACGCCGGCTCCCCCGGCGGCCGCTGCAGTGCCTGCTCCGGCTGCCGACCTGGCCGCCGccttggagcagcagcagctgctcctggcccagcagcagctcttcggcggcggcggcgacgctGCCTCCCAGTACATGCAGCAGCTGTTCCGCAACCTGGTGTTCCAGTCCCAGACGCCGGGCTTCTCCTTCTTCCCCTTCATggcgcccccgccgccgcagGCGAACCCCGAGAAGCCGCCCCTGGTCAGTCCGCCCTCGCGGATGAATCCCCTCCCCGTCGGCGtcggcgtgggcgtgggcgtgggcgtgccCGTGCCACCCGGCGGACCCGTCAAGATGGTGATCAAGAACGGGGTGCTGATGCCCAAGCAGAAGCAGCGCCGCTACCGCACCGAGCGGCCCTTCGCCTGCGAGCACTGCTCCGCCCGGTTCACGCTCCGCTCCAACATGGAGCGCCATgtgaagcagcagcatccgcagTTCTACGCCCAGCGACAGCGGAGCGGCCACCACGTGATGCGGGGCAGGGGCGCCTcgagcgccgccgccgctgctgctgccgccgccgccgctgcagcggctgccatGGGTCCCGGAGGAGGCTCCTCCCATCACCATGGCCACCCCCACAGTCATGGTCACAGCCACAGTCATGGTCATGGTCACAGCCATGgtcatgggcatgggcatgctCCCATCTCGGAGCAGGTGAAGTACGCCATTCTGGCGCAGCAGCTGAAGGCGCACAAGAACACCGATCTCCTGCAGCAGGCCCTGGCCCACGGCTCCAGCAGTGTGGCGGGGAATACCCTCCTGCACTTTGGCTACCCACTGGGCCCGGCGCCCGGGACTCCGCAGGTGAGCGGCCATGGCAACGGACCGACGCCCATGGCCATCGACGATGACGAGCCCAAGCTGGTCATTGACGAGGATGAGAACGATCACGATCACGATCACGATCACGACGTGGAGCCGGAGGATGCGGATGActacgaggacgaggaggatgaggaggaggacgagccgGAGCCCGAGGACGAGCCGGAGGTGATTCTGGACGAGCCCTCTGGCCTTGTTGTcgtggagaaggaggagcccccggaggaggaggaggaggaggaggaagatgagcccgaggaggagctgtccAAGCCCCTGGAGCAGCTCAGCGCCAGTCCCAGTCAGAACGAGGCGGCCCAGAAGATGGCGGAGACCATCCTGGAGCAGGCCATCAAGGCGGGCAAGCAGCCATCCCCATCCGCCGTTGTCCAGGAGGAGCATCCCCCGGCGGCCCTCACCCCGCCCTCGGCCATGCAGGAGCCGAGCAGCAATCCCAGCAGCCTGAAGACCATGATTGCCCAGGCCGAGTGCGTCGGCAAGTCCCTGAAGGAGGTGGCCAGTTCGCCGTTCAAGGACGAGTCGCAGGACCTGGTGCCGGTGGCCAAGCTGGTGGACAACGCCACCAGCCAGAACATGAGCTTCAACAGCTACTTCCGGCCCAGCGACGTGGCCAACCACATGGAGCAGAGCGACGAGGAGGGCCTGGTGGCCTCCGGCAGTGCCAGcgagagcaacaacagcggcaccGAGGACgtcaccagctccagctccggcagcGAGCCCAAGAAGAAGTCCGCCTACAGCCTGGCCCCCAACCGCGTCTCCTGCCCCTACTGCCAGCGCATGTTCCCCTGGAGCAGCTCCCTCCGCCGGCACATCCTCACCCACACCGGCCAGAAGCCCTTCAAGTGCTCCCACTGCCCCCTGCTCTTCACCACCAAGAGCAACTGCGACCGGCATCTGCTGCGCAAGCACGGCAACGTCGAGTCCGCCATGTCCGTCTATGTGCCCACCGAGGACGTCAGCGAGCCGATCCCAGTGCCCAAGTCCGTGGAGGAGatcgagctggaggagcagcggcgCCGCCAGGAGGCGGAGCGCGAACGGGAGCgcgagctggagcgggagcgtgagctggagcgggagcgggagctggagcgggagcgcgagctggagaaggagaaggagcgcgAGCGCCAGCAGCTCATCCACAAGCTGGCCGCCCAGATGagtgccgctgccgcagcagctgctgcccaagctgccgccgccgccgctgccgcggCCTCGTGCGCCGCCTCGCCCGGCAACGGATCCTCTGCCGCAGCTGGCGGCGATCTGTCCGCCGGCGGGGATCTGCCCTACAAGTGCCACCTGTGCGAGGGCTCCTTCGCCGAGCGGCTGCAGTGCCTGGAGCACATCAAGCAGACGCACGCCCACGAGTtcgccctgctcctggccaagGGCGCCATTGAGAACGAGTCCCTGCAGGCCGCCGACGCCTCaaatccccagcagcagctgcagcagcaccagcactcGGACGACGAGGCCACCAACGGCCTGGGACGCGGCAAGTATCCGGACTATAGCAACCGCAAGGTGATCTGCGCCTTCTGCGTCCGCCGCTTCTGGTCCACCGAGGATCTGCGCCGCCACATGCGCACCCACTCCGGGGAGCGGCCCTTCCAGTGCGACATCTGCCTCCGCAAGTTCACCCTCAAGCACAGCATGCTCCGCCACATGAAGAAGCACAGCGGCAGGGCCCACAATGGGGACACGCCCGGCTCCGACTGCTCCGATGACGAGCAGGCCATGAGCAGTCCCCCGGGCACTCCGGCGCCCTCGCCTATGCCGCTGCCCTCcagcgccaacaacaacaacagctgccagaacaacaataacaacaataacaacaataataacaacaacaataccaataacaacaacaacaagctggGCCTGAAGCTGCCCAAGTTGCACGAGCTGCTGGACAAGGCGAACGAGTGGCGGGCGAGTCGGCTGGGGGAGCACAAGGAGAACCTGGGCGAGGCCACGCCCTCGGGAGCAGCGGCCGCGGGCTCGGATCTGATTGGGAACCTCCTGGGGATCAGCGACCAGGGCATACTCAACAAGCTGCTGTCCTCGGCCGACGAGGCGGCCAAGCTCCTGGGCGTGGACAACAAGTGA
Protein Sequence
MSSNNTDVVEMERKRRESTTSESSLEHLDLGRTPKKLSGSAGAAQSTSTPHEAVAATSRKRKLRQLQQLQQQHHQHQQSQDLLTDEDEDEEEARPLNRHKQRRGAAQGSSSASIVVDYSAGDASSLRKKFRLNRSAASLSESGFVDASSTAHSGYLGNNSSSASASTSTSAAVPPAPGASGGAAASAASSSSTSTSSNSSSGGSSPQGLCLSSGESGIGAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQTAQSQSHSQSQSQSQSQSQSQQQRRQQQQQQQQTHPAQQQQQQQQQALASSMPVRAESYESDASCSTDVSSGNSRSRSSSSLLHNNNNNNSHKTTNNNNSRSGKELELEEMQEEELDSKQHLRRLKTTINNNVIDAVNHAEEEGGEEEADDAEDVAMLTSTPDVATLLAGASASGAASRSPSPSPPGSPGLLLSCPACGASDFESLPSLCAHLDARHSDIPAKCRDCEVIFASHRQLQAHCCRGSALGVGLPPMLGASSSPLHADEDAEDEEEADHEDDEELEQRRDDFFHKLYLKGTAGATGGNGNGGGGGLISHPPSPIKHEPADSKDLADIQSILNMTSSSCTSSFLRNFEQSVNTPSSSQYSLDGRDQEEEAQDAFTSEFRRMKLRGEFPCKLCTAVFPNLRALKGHNRVHLGAVGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREEVKRAIVYHPAEDAGCEDSKSRLGEDLADLSFRSISPTPPPPLAESSSSQLKHMLMAEQQHLHQPVAPAQPPLKIQVKSLDQLVDKKPAAAPQQPLLAEKGPGSALDFSMDVLDLSKKPTGAATTPTPTPTPALTPAPPAAAAVPAPAADLAAALEQQQLLLAQQQLFGGGGDAASQYMQQLFRNLVFQSQTPGFSFFPFMAPPPPQANPEKPPLVSPPSRMNPLPVGVGVGVGVGVPVPPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASSAAAAAAAAAAAAAAAMGPGGGSSHHHGHPHSHGHSHSHGHGHSHGHGHGHAPISEQVKYAILAQQLKAHKNTDLLQQALAHGSSSVAGNTLLHFGYPLGPAPGTPQVSGHGNGPTPMAIDDDEPKLVIDEDENDHDHDHDHDVEPEDADDYEDEEDEEEDEPEPEDEPEVILDEPSGLVVVEKEEPPEEEEEEEEDEPEEELSKPLEQLSASPSQNEAAQKMAETILEQAIKAGKQPSPSAVVQEEHPPAALTPPSAMQEPSSNPSSLKTMIAQAECVGKSLKEVASSPFKDESQDLVPVAKLVDNATSQNMSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSGSEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRQEAERERERELERERELERERELERERELEKEKERERQQLIHKLAAQMSAAAAAAAAQAAAAAAAAASCAASPGNGSSAAAGGDLSAGGDLPYKCHLCEGSFAERLQCLEHIKQTHAHEFALLLAKGAIENESLQAADASNPQQQLQQHQHSDDEATNGLGRGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHMKKHSGRAHNGDTPGSDCSDDEQAMSSPPGTPAPSPMPLPSSANNNNSCQNNNNNNNNNNNNNNTNNNNNKLGLKLPKLHELLDKANEWRASRLGEHKENLGEATPSGAAAAGSDLIGNLLGISDQGILNKLLSSADEAAKLLGVDNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00491706;
90% Identity
-
80% Identity
-