Dpec002679.1
Basic Information
- Insect
- Drosophila pectinifera
- Gene Symbol
- -
- Assembly
- GCA_008042775.1
- Location
- VNKC01002367.1:35290-37897[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 0.79 10.1 3.7 3 23 279 299 277 299 0.97 2 12 0.00048 0.034 14.4 0.7 1 23 305 330 305 330 0.94 3 12 0.0037 0.26 11.7 0.6 2 23 338 362 337 362 0.93 4 12 6.2e-05 0.0044 17.2 1.3 1 23 374 396 374 396 0.98 5 12 1.7e-06 0.00012 22.1 0.1 1 23 403 425 403 425 0.98 6 12 0.011 0.78 10.2 0.2 1 23 431 453 431 453 0.97 7 12 0.059 4.1 7.9 3.0 1 23 459 482 459 482 0.97 8 12 0.0093 0.66 10.4 4.4 1 23 488 510 488 510 0.96 9 12 0.093 6.5 7.3 5.3 2 23 517 538 516 538 0.96 10 12 0.0001 0.0073 16.5 0.2 1 23 654 677 654 677 0.95 11 12 0.089 6.3 7.3 1.3 1 21 683 702 683 705 0.75 12 12 1.4e-07 1e-05 25.6 3.0 1 23 711 733 711 733 0.98
Sequence Information
- Coding Sequence
- ATGGACGTGGCGCGCACCTACTCGATCCACAGCCTGTGCAGGATCTGCCTGAACCACCTGCAGAACGACGCCGACTTATACGACTTGTATCTGGTGCCAGGACTGGCCAAGAAGCTATGCTTCTGCACCTCGCTGTCCGTGGAGCAGAACGATGGCTTTCCGAAGAATCTGTGCACCCAGTGCTACTCCAAGCTCACCGAGCTCCACGACTTCCAGCGGATGTGTGTGGACTCGGTGCAGAAGTTCCAAGACCTCGTCGCCAGCAACGCCTTCGCCTGCCAAAGCAACTTCGATGTCCTGGACCCCAGTGTGTCCGTGCAAGACATcgccggcgaggaggaggagaacatCAACTATGATCCACTGCTAAACCACAAGATGGAGCTGATCGAGAACGAGGAGGACGTGTTCAAGATGCTGGAGCACGTGGACAAGGAGGCCGAGGAGGTGGAGAATGGCACcaagcaggaggaggaagacgaTAAGGCCGACGTCAGTCACATTAAGATGTTCGACGACGACTCCTCCATCGAGAgcggcaacgacaacgaccGGGATCTGGACTTCGAGCCGAACAGCAGCGACGACGACATTCCGCTGGCCCAACGCATGCGAGGACCTGGAGCAGGATCTTCCCAGCTAGCTAAGCCTAAGGGCAAACCTCGGGGCAGGCCCAAGAAGATAAAGCCGCCCCCGCCGGACGAGGAGGATTTCACCAGTGACTCCGACGACTCGGATAACTCGGACGATAACAATCCCGACGGAACGCCCAGGGACAAGCCGAAGAGGAAGCGCATTCCCGCCGACGAGCGCCACCTGCACCGCATCATCGACTGCCACATCTGCCACCAGAAGTTCAAGAAGGCGATCCGCTACGAGGAGCACATGAAGTACCACAACGACCTGCTGCCCTTCCAGTGCAAGGTGGAAACCTGCAAGAAAGGCTTCACCACGGCCAACGGCCTGCGCATCCACATTGACCACGCCCACACCGAACTGTCGGAGGTGCATGCTTGCTCTGCGGAGGGCTGCGGCAAAACTTTCCCTCGCGTCCGCCTGCTCACCTTCCACATGAAAAAGGTGCACGGCCTGACCAAGGCGGCGGCTCCGCTGCGCGACTTCCCTTGTCCGGAATGCGACACGGTCTTCCGCTGCCCCACGGCTCTCAAGAAGCACATGTACAAGCACACGGGCGAGGAGCTTCCGTATCCATGCAACATCTGCGGCAAGAGGTTCGTGATCAACAGTGCCCTGAGGGATCACTTGATGCGGCATGCGGGCATCAAGAACCACGTGTGCCCGTACTGCGGCGTGGGTAAGACCACGCGCCAGGAGTGGAACGCCCACATCCTCACGCACACCAAGGAGAAGAAGTTCAAGTGCCGGCAGTGTGACCACGCCTCCCACAACAAACAGGCCCTATCCAACCACGTTAAGGTGGTGCACGAGAAGCGCAAGGACTTCGCCTGCCAGTACTGCGGCAAGACTTTCGGCAAGAGCCACGCCTGCAAGGTGCACGAGCGGAGCCACACCGGGGAGAAGTGCTGCGAGTGCAAAATCTGTGGCAAGATCTTCCTCTGCGAGAAGAGCCTGACCAAGCATTTGAAGACACACGAGAAGCGCGACCTGCCGCCGTCAGAGCCGCACCGCCAGCAACTAAACATTCCCATGCCCGGCCAATTGGCAGGCCAAATACCGGGCCAGATGCCCGGTCAGATGCCGATGCAGATGCAGGGCGGCGATGGCCTACTGCAGATGCAGTCCAACCAGATACCGAGTGATGACATGCTCAAGGCGTGCGGCGGCGGGTCCGCTGCAGTGCCTCCGAAGCCGAAGAACTCGCGCCGCGTCCAGCGGGTGGATATTGCGCAGCTGGCGGGCACCGCCGTCAACCCAATACCCTCCGTCTCTGTGCCCTCGTGGTCGCCGCAGGTGAACTTCACCAAGAAGGAAGGCCAGCACATCTGCCCGGGCTGCGGACGTGGCTTCAATAACATTGGCAACATGAAGCTCCATTACAAGATCATCCACGAGAAGGTGAAGGACTTTGCCTGCAGATTCTGCCCCAAGAGGTTCTCCAAGGCGCAGATCCTGCGCCACCACGAATGGATCCACACCGGAGAGAAGCCCTTCGAGTGCAAGATCTGCGGCAAGCACTTCCGCCAGGAGACGGCGCTCAAGAAGCACATCAAGACGCACGAGAAGCCGAACCGGAGGCACGTGCCCGAGCGCAGTGCGCCCACCCAGATCACGTTCCGGAAGCTGGAGCCGGACGCAGAGCCGCGGAACTTTGACCAGTACCAGGATCCGGCGGTGGAGCGGGCGGCGGCCACCGCCGAGCTGCTAGCCCACCAGCTGGAGGAAAACGAGGCCAAGCGGAAGGCGGACATCGAGCGGCAGAAGATAGCGGCCGCCGCCTGCGAGCAGTTGacgaagctgcagcagcaacaggataTCATCAAGGCCACCACCTCGTACGACGGCTACTACGCGCAGAAGGCCCAGGCCGAGGGCACCAGCATCGATGCCCTGAAGATCGATCATGTCTAG
- Protein Sequence
- MDVARTYSIHSLCRICLNHLQNDADLYDLYLVPGLAKKLCFCTSLSVEQNDGFPKNLCTQCYSKLTELHDFQRMCVDSVQKFQDLVASNAFACQSNFDVLDPSVSVQDIAGEEEENINYDPLLNHKMELIENEEDVFKMLEHVDKEAEEVENGTKQEEEDDKADVSHIKMFDDDSSIESGNDNDRDLDFEPNSSDDDIPLAQRMRGPGAGSSQLAKPKGKPRGRPKKIKPPPPDEEDFTSDSDDSDNSDDNNPDGTPRDKPKRKRIPADERHLHRIIDCHICHQKFKKAIRYEEHMKYHNDLLPFQCKVETCKKGFTTANGLRIHIDHAHTELSEVHACSAEGCGKTFPRVRLLTFHMKKVHGLTKAAAPLRDFPCPECDTVFRCPTALKKHMYKHTGEELPYPCNICGKRFVINSALRDHLMRHAGIKNHVCPYCGVGKTTRQEWNAHILTHTKEKKFKCRQCDHASHNKQALSNHVKVVHEKRKDFACQYCGKTFGKSHACKVHERSHTGEKCCECKICGKIFLCEKSLTKHLKTHEKRDLPPSEPHRQQLNIPMPGQLAGQIPGQMPGQMPMQMQGGDGLLQMQSNQIPSDDMLKACGGGSAAVPPKPKNSRRVQRVDIAQLAGTAVNPIPSVSVPSWSPQVNFTKKEGQHICPGCGRGFNNIGNMKLHYKIIHEKVKDFACRFCPKRFSKAQILRHHEWIHTGEKPFECKICGKHFRQETALKKHIKTHEKPNRRHVPERSAPTQITFRKLEPDAEPRNFDQYQDPAVERAAATAELLAHQLEENEAKRKADIERQKIAAAACEQLTKLQQQQDIIKATTSYDGYYAQKAQAEGTSIDALKIDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00486750;
- 90% Identity
- iTF_00483135;
- 80% Identity
- -