Basic Information

Insect: Drosophila pectinifera
Gene Symbol: -
Assembly: GCA_008042775.1
Location: VNKC01002161.1:6083-9467[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00019 0.014 15.7 0.7 3 23 182 203 181 203 0.96

2 16 0.0017 0.12 12.7 3.3 1 23 220 243 220 243 0.92

3 16 0.0025 0.18 12.2 3.6 1 23 314 337 314 337 0.96

4 16 0.014 1 9.8 1.8 2 23 392 413 391 413 0.95

5 16 1 70 4.0 0.5 1 20 529 548 529 550 0.84

6 16 0.044 3.1 8.3 0.8 1 23 559 581 559 581 0.93

7 16 0.00074 0.052 13.9 0.5 1 23 588 611 588 611 0.96

8 16 0.00038 0.027 14.8 1.4 2 23 620 641 619 641 0.96

9 16 0.0034 0.24 11.8 0.0 2 20 668 686 667 692 0.92

10 16 0.0011 0.074 13.4 1.2 1 23 728 751 728 751 0.96

11 16 4.1 2.9e+02 2.1 1.3 1 21 758 778 758 779 0.92

12 16 0.026 1.9 9.0 0.1 1 23 788 811 788 811 0.95

13 16 2.4e-06 0.00017 21.7 0.5 1 23 832 855 832 855 0.97

14 16 0.032 2.3 8.7 0.2 1 23 865 887 865 887 0.94

15 16 0.00019 0.013 15.7 3.6 1 23 893 915 893 915 0.99

16 16 5.4e-05 0.0038 17.4 1.0 1 23 921 943 921 943 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00019	0.014	15.7	0.7	3	23	182	203	181	203	0.96
2	16	0.0017	0.12	12.7	3.3	1	23	220	243	220	243	0.92
3	16	0.0025	0.18	12.2	3.6	1	23	314	337	314	337	0.96
4	16	0.014	1	9.8	1.8	2	23	392	413	391	413	0.95
5	16	1	70	4.0	0.5	1	20	529	548	529	550	0.84
6	16	0.044	3.1	8.3	0.8	1	23	559	581	559	581	0.93
7	16	0.00074	0.052	13.9	0.5	1	23	588	611	588	611	0.96
8	16	0.00038	0.027	14.8	1.4	2	23	620	641	619	641	0.96
9	16	0.0034	0.24	11.8	0.0	2	20	668	686	667	692	0.92
10	16	0.0011	0.074	13.4	1.2	1	23	728	751	728	751	0.96
11	16	4.1	2.9e+02	2.1	1.3	1	21	758	778	758	779	0.92
12	16	0.026	1.9	9.0	0.1	1	23	788	811	788	811	0.95
13	16	2.4e-06	0.00017	21.7	0.5	1	23	832	855	832	855	0.97
14	16	0.032	2.3	8.7	0.2	1	23	865	887	865	887	0.94
15	16	0.00019	0.013	15.7	3.6	1	23	893	915	893	915	0.99
16	16	5.4e-05	0.0038	17.4	1.0	1	23	921	943	921	943	0.97

Sequence Information

Coding Sequence: ATGACGCGGACGTGCAGAATCTGCGGCGGGGCTGACGGGCGCTACTGGATTGAGACGCCCGTGGAGAAGTACGCGGAGAAGACTTTCGGACAGCTGCTAGTTGAACTAACTAGGATCGAGGTGGCTATGGCCCAGGCGGAGAAGTTCCCCCAGTGGCTGTGCTCCGCCTGTACCCAGAAGCTGGAGAGCACCTACGACTTTGTGCTGCAGGCGCGCCAAACGCATGAGCTTTGGCTGCGTAAGCTGGACGACGACTCCGCAGACGAAATGCTGGGCCCTGAGGCCTTGGAAGCTCTTAGGGAGACACCCATCAACATTTTCGAAATTGAAGGCGTGACCATCAAGACTGAGGAGCTTGAGCTGCCGTCCAAGGTTGGAAAAAGCGATGCCGCTACCGATCCTTTGGTACGCTCGCGTTTCTTAAAGCGCACCATCGTGCACTTTAGCGACTCGGACGGTGGGGACCAGGATGACGTCCCGCTGCGTCAGCGCAAGGTGTCGCCACCCCCACAGCCCGCCAGCTTCGAGGAGAAGCACAACATCTGCGAGGTGTGCAACAAGGCGTTCCGATACGTCACCAACCTGTATCGACACAAACAGCGGGATCATGGGCTTCCGCCCAAGCCGGGCGAGGAAATAGATGATGATGACAACTACTACAAGTGCGACCACTGCGACAAGTCCTACAAATACGTCATGGCGTTGGTGAAGCACAAGCACGCCGAGCACGGAGCAAGTCTATTGCCCTCAAAGACGTCCAGGCGAAAGTTACCCGGCAGGCCTTCCGTGATGCCCGGCGATACGAGTCCGACTAGTCCAGCTTCTACCTCGGGAACCTCCACGCAGCGCAGTCGGGGCAATACTGACACCCTTGTGCACAGCATCATCAAGGCAGTCGAGCTCTCGGACGAGGatgacagcagcagcgtcgACAACTACTATAAGTGCGATCAGTGCAGTAAATCCTATAAGTACATAGTCAGCCTGATCAAGCACAAGCACAGGGAGCACACGGATCAGGATAAGAAGCAGTCGGATTCGGAGGACGATCTGCCGCTGGCCTCCACATCCGCAGCCtcggcatcagcagcaacaaccaagCCGTCGAGAATCAATCGACGCGTTGAGGACTTCGACCCGCATTGCTGTGAGCCCAATGGGGCCAAGGAAATCAAGTGCATGATCTGCCTGCGTCGGTTCACCAAACTGCGCGAGCTAAGGGATCATCTGCATGCTCATCCCACTGACTTCGATTTCGAGGCACACGGAGAACCCATTGAGCGCATAGCCGAAGGATTTTTCAAGACTGCCGTCGAGTCGACGACGGAGGGCTTAAAGCGCCGAATATTCCGAGACCTCCGAATGGGCGTATATGGCCGCTACTATTCCATTACGAACCAAGCGCGCTACGAGATGAATATGGACAGCTCGGACACGGACAGCGAGGGTGACGATGCCGAGGCGGATGTTGTGCTGCGTCGAAGCTACGCCTGCGAACTATGTGACTCCCCAGAGGCCAGGTGGCCGCGGAAGTACCTCCTGCATCAGCACCATCGACAGGAGCACACCTGGCTGGATGCTCCGTATGTCTGCCAGCGCTGCGACTCCCGCTTCCTCAGTGCCCAGTTGCTGGAGCACCACACCAGCCAGCTGTGCCAAAATACGCTAAAGCGATTCCAGTGTGACAAGTGTCCGCAGCGCTTCTTCTGGCGCCGAAACCTGCGCGGCCATCTCGTCGAGCACAAAAGCAAGCAAGAGAACTACCCGTGCGACCAGTGCTCCCGCAACTTTCAGGACAAGAGCGCCGTTACCAAGCACAAGCTGATGGTGCACCGGGATGGCAACATGCAGCTCCTTCCCTGCCGATGGTGCACGCGCACCTTTTACCGACCAGCTTTGCTGCATAAGCACGTTCAGCGGCACGGATTCAGTGGCCAGGATCTACCACTTGCTGAGACTCTGCTGGCTGACGCCTCCAAGCATTCGGGTCAAAAGAGCATCCAGTGCAAGATGTGCGACATTCAGTTCATCAGCGTAGCGGATCTGCGTCGTCATGTCGCTATGCAGGGAGGCCACAGCGACCAGCCATCGGCATACATGATTAGCACTGAAACTGGTTTTGAGCTCCACTTGGAAGATACGGACGACAGTGATGAGGAGAACCCTTCATCCAGAAGATCCTACAGGTGCGACCTCTGCGAACTGAGCTTCCGGCGGCGACGGGAGATGAGCGAGCACCAGTACTCCTTGCATAGCTTCGACAAGTTGCCACATTCCTGCGAGCACTGCATCTTTAAGACTGTGGATAAGCAAATGCTGGAACAGCACTTAAGCAGACAGTGCAGGAACGGCGAAAAGAAGTTCGCCTGCCCGCGCTGTGGCTACAAGTTTATGTGGGAGGAGAATCTTGCTCTGCACTTGGCCACTCAGCATCCCAAACAACCCACCATGCTGGAGCATCAGCAGCCGTCGAGAAGGAAACGTCGATTCCGCTACCAGTGCCCCCATTGTTGGCGCTCCTTTGTCGTTCAGCCCAGTTTGGAGAAGCATATCCGGGACATGCACGTGGCCAAGAAGAACCCGGGCAAGAAGTATCTCTGCTCGCTCTGTGGTCTAGAATCCCTGACGCCCAACAAACTGAACATCCATATGCGGCGCCACATGGGCGAGAAGCCGTTTAAGTGCGATCTCTGCGAAATGCGCTTTACCGTTCACTACGAGCTGAAGGTGCACCGCCGGAAGCATACGGGCGAGCGGCCCTATCAATGCACCTTCTGTGCAAAGGACTTTGCCCGCCCGGACAAACTACGGCGTCACGTTTTTATGCACAACGTCAAGTCATAG
Protein Sequence: MTRTCRICGGADGRYWIETPVEKYAEKTFGQLLVELTRIEVAMAQAEKFPQWLCSACTQKLESTYDFVLQARQTHELWLRKLDDDSADEMLGPEALEALRETPINIFEIEGVTIKTEELELPSKVGKSDAATDPLVRSRFLKRTIVHFSDSDGGDQDDVPLRQRKVSPPPQPASFEEKHNICEVCNKAFRYVTNLYRHKQRDHGLPPKPGEEIDDDDNYYKCDHCDKSYKYVMALVKHKHAEHGASLLPSKTSRRKLPGRPSVMPGDTSPTSPASTSGTSTQRSRGNTDTLVHSIIKAVELSDEDDSSSVDNYYKCDQCSKSYKYIVSLIKHKHREHTDQDKKQSDSEDDLPLASTSAASASAATTKPSRINRRVEDFDPHCCEPNGAKEIKCMICLRRFTKLRELRDHLHAHPTDFDFEAHGEPIERIAEGFFKTAVESTTEGLKRRIFRDLRMGVYGRYYSITNQARYEMNMDSSDTDSEGDDAEADVVLRRSYACELCDSPEARWPRKYLLHQHHRQEHTWLDAPYVCQRCDSRFLSAQLLEHHTSQLCQNTLKRFQCDKCPQRFFWRRNLRGHLVEHKSKQENYPCDQCSRNFQDKSAVTKHKLMVHRDGNMQLLPCRWCTRTFYRPALLHKHVQRHGFSGQDLPLAETLLADASKHSGQKSIQCKMCDIQFISVADLRRHVAMQGGHSDQPSAYMISTETGFELHLEDTDDSDEENPSSRRSYRCDLCELSFRRRREMSEHQYSLHSFDKLPHSCEHCIFKTVDKQMLEQHLSRQCRNGEKKFACPRCGYKFMWEENLALHLATQHPKQPTMLEHQQPSRRKRRFRYQCPHCWRSFVVQPSLEKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLNIHMRRHMGEKPFKCDLCEMRFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVFMHNVKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00548234;
90% Identity: iTF_00524559;
80% Identity: -