Dpec011346.1
Basic Information
- Insect
- Drosophila pectinifera
- Gene Symbol
- -
- Assembly
- GCA_008042775.1
- Location
- VNKC01002694.1:36421-39335[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.7 3.3e+02 1.9 0.9 2 23 148 170 147 170 0.92 2 13 0.0018 0.13 12.6 5.0 1 23 186 209 186 209 0.97 3 13 3.4e-06 0.00024 21.2 5.5 2 23 216 238 215 238 0.96 4 13 0.0094 0.66 10.4 9.1 2 23 470 491 470 491 0.97 5 13 1.6e-06 0.00011 22.2 2.9 1 23 497 520 497 520 0.95 6 13 0.0003 0.021 15.1 0.4 1 23 525 548 525 548 0.93 7 13 5.3e-05 0.0038 17.5 5.5 1 23 566 588 566 588 0.96 8 13 0.00021 0.015 15.6 0.6 1 23 593 615 593 615 0.98 9 13 2.8e-05 0.002 18.3 1.7 1 23 621 643 621 643 0.95 10 13 2e-05 0.0014 18.8 0.7 1 23 649 671 649 671 0.98 11 13 2.9e-07 2e-05 24.6 2.7 3 23 679 699 678 699 0.99 12 13 2.1e-08 1.5e-06 28.1 1.1 1 23 705 727 705 727 0.99 13 13 0.32 23 5.6 3.4 1 19 732 750 732 755 0.89
Sequence Information
- Coding Sequence
- ATGCACCCAGCACGAGCACTAGCCATGGCATCGCACTACCCGCACCCGCAGCCGGAGCCGGGTCCGAAGCCGGAGACGCAGCCGGCGGCCAATATGTTGGTCGCCCTGGACGCAGTTGACGCGGATCGAGTCTGCCGCGTATGCCTTAAGGACGCTTCCCAGGATGGCGAGCTGCACTTCATCTTCGCGGACGGGCCGGTGGAGCTGGGCGCCAACTTGGCGCGCATCCTGGACGAATGCACCCTGCATCCGTGCGAGCGGCACGACGGTATGCCGTCGAACATGTGCGGCTCCTGCGTGGAGGCCGCCTGCCACGCCTACCGCTTCAAGCGGAACGCCGAGCGCTCCTACTGTTCGCTGGTGGCCCTACTTGGCCGCTCCCCGCAGCTAAAGAAGAGCGGAGCCGAAGCGGGCACGCAGACCGACCAGGTGGCCCTGCTGCCCTGCGAGATGTGCCACGACCAGTTTCTCAACAGCCTGGAGCTGCGCCTGCACCGCAATCGGGTGCACAGGACGACGAAGGAGGGCACTGAGGGCAGCGGAGCCGGCGAGGAATTCAAGTGCAAGTTCTGTCCGCAGCACTTCCCGCATCTCCGGCAGCTGCGCAGCCACTTGGCGCGCAGTCACGAGCAGACCGCTCGCCTCCAGTGCGCCCACTGCCAGCGTACTTTCAGTCGCCGTGATCACCTGCTGCGTCACATGCGCAACCAGCACCCGCACCTGGACGATGACCTCTTCCACACTTGGCCGCCGGCTGACGAGACCACCATGCAAAGCTCCGCGGGTGATGAGCTCGTCTCCGCGGAAGTGCTCCTCAACGAGGAGGATGACGACCACGAGGTCGAGGGCGATATCTTCCAATGCAATACGAATCCCATTTCCAgcaacgaggaggaggacgacgatgaggaTAACGTAGAGGCTAAGCAGACACTATGGCTGCACATCAAGCCGGAGCCCTGCCTGGAGGCCGAGGAAGTTGACCTGGCCACGCAGCTGAAGCTTGAGAaaaagcggcggcggcgcgaAAAGGCGGAAGCGCGTGTCGTGAGCTCCAGTGATTCGCCAGTGAAACATGAACCCGTAGCCCCCGGCGACTCCCATCTTAGCATCAAGCAGGAGAGCCAGCTGGTTGGCAGCGAGGACGAGTCACCCATGGGTGTGGAGGAGTTCATGGCGCTGCACGTTACAGGAGAACTGCCGCTCAGCGATGAGGACCATTTCGGTGACTACGGCGACGACGAAAGCGCcctggacgacgacgacgaggacgaggatgaggatggaGATGACGAGGACGGGGAGTTCAAGCTGAAGGAGGAGCCGCTGGACGGTGAGCAACCGCCAAAAAAGTCCAAGTctggccggcggcggcgacgcaACAAGGGCGAGCCTAATCCCGAGAATCGGTGCGATGTGTGTCAGCGCACCTTCTCGCGCCACTGCCACCTGCTGCGCCACAAGCTGTCCCACTTGGAGAAGAAGCCCCACAACTGCCCGCACTGCCCCAAGGCGTTTGCGCGCAGTGACCACCTCAAGGCGCATGTACAGAGCCTGCATAGCAATAAGGAGCATAAGTGCGGCATCTGCGAGGCCGCCTTCTCCCGGCTGGATGCTCTGGAGCGGCACAAAGTAAGCAAGCACAACGGCGAGGGCCTAGAGCCGGGCAGCGAGCTCAAGCTGCAACTAGCCGAACACACCTGCGAGTACTGCTCCAAGCGCTTCTCCAGCAAAACGTACTTGCGCAAACACACGCTGCTGCACACCGATTTCCTTTATGCCTGCAAGAGCTGCGAGGAGACGTTCCGGGAGCGCGCCCAGCTGCGGGAGCACGAGAAGACGCACACCGGCCAACGCAACTTCCTCTGCTGCATTTGCGGCGATAGCTTTGCCCGCAACGACTACCTCCGCGTCCACATGCGGCGCCACAACGGCGAGAAGCCCTACAAGTGCCGCTACTGTGTCAAGGCCTTTCCCCGGGCCACCGATCTCAAGGTCCACGAGCGGTACCACACGAACACGAAACCGAACCTGTGCAATACCTGCGGAAAGAGCTTCCACCGGGCCTACAACCTGACCATCCACATGCGCACGCACACGGGCGAGCGACCGTACAAATGCGACCAGTGCCCCAAGAGCTTCACGCAAAGCAATGACCTCAAGGCTCACATTCGCCGGCACACGGGCGAGCGGTACAAGTGTCCGCACTGCGATGCCTACTTCCTGCAGCTGTACAACATGCGCAACCACTGCTTGAGCGCCCACAATAAGCACATCGAAACGAAGACGGGACGCCTGCAGCGGACGGGTCTGCTAGATGACGGCGGCCAGTCGCATCTCACCACCGTTGTGATGCCGCCGGCGCAGCTGGGGACCGCTGTGGCGGTCGCTGGCACTGAGAGCTCATCCTCGACCACTGTCATCCACTCGCCGGGAGCGTATAGCAATGCGACATCCGCCGGACTGGCTCCGGTGGCTGCTGTGCCCACGGCACCAGTGTCCGCCACTCTCGATGGCGCCAGCTTTGCCCCTACGCCGGTCAacgcggcggcagcagcgcccTTTGGAGCTTTTAACTTCCCACCCGCAGTGATGGCGCATCTCATGTACAACCACGGAGGAAGTAGCCAGCACAGCCAGAGTGGCAGCGACACGGGCAAATAG
- Protein Sequence
- MHPARALAMASHYPHPQPEPGPKPETQPAANMLVALDAVDADRVCRVCLKDASQDGELHFIFADGPVELGANLARILDECTLHPCERHDGMPSNMCGSCVEAACHAYRFKRNAERSYCSLVALLGRSPQLKKSGAEAGTQTDQVALLPCEMCHDQFLNSLELRLHRNRVHRTTKEGTEGSGAGEEFKCKFCPQHFPHLRQLRSHLARSHEQTARLQCAHCQRTFSRRDHLLRHMRNQHPHLDDDLFHTWPPADETTMQSSAGDELVSAEVLLNEEDDDHEVEGDIFQCNTNPISSNEEEDDDEDNVEAKQTLWLHIKPEPCLEAEEVDLATQLKLEKKRRRREKAEARVVSSSDSPVKHEPVAPGDSHLSIKQESQLVGSEDESPMGVEEFMALHVTGELPLSDEDHFGDYGDDESALDDDDEDEDEDGDDEDGEFKLKEEPLDGEQPPKKSKSGRRRRRNKGEPNPENRCDVCQRTFSRHCHLLRHKLSHLEKKPHNCPHCPKAFARSDHLKAHVQSLHSNKEHKCGICEAAFSRLDALERHKVSKHNGEGLEPGSELKLQLAEHTCEYCSKRFSSKTYLRKHTLLHTDFLYACKSCEETFRERAQLREHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTNTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCPHCDAYFLQLYNMRNHCLSAHNKHIETKTGRLQRTGLLDDGGQSHLTTVVMPPAQLGTAVAVAGTESSSSTTVIHSPGAYSNATSAGLAPVAAVPTAPVSATLDGASFAPTPVNAAAAAPFGAFNFPPAVMAHLMYNHGGSSQHSQSGSDTGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00489505;
- 90% Identity
- iTF_00590372;
- 80% Identity
- -