Dpec013391.1
Basic Information
- Insect
- Drosophila pectinifera
- Gene Symbol
- egg
- Assembly
- GCA_008042775.1
- Location
- VNKC01004117.1:22686-27015[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-14 9.1e-11 41.1 0.0 5 75 869 932 866 934 0.90
Sequence Information
- Coding Sequence
- ATGGATTGCGCGGAGGGCACTGAATCCACAGCAAAGGAGGTTCCTGCATCGTCTGCTGCAGAGGAGCAAGAAGCCGGGTCGACAGTGGTGCCggctgaaaaaaaaattgtcgAATCCACTGTGCCGGCGGAAAGGGAAGGAGCAGATGTGGAGATGGAGGATCTAACCCTCGAGGATCCCTCTCCCAGTGAAAAGGACGTTCCGAGTGAGGAGCCAAAGGAAGTGTgtgaagaagcagaagcaccCAAGGATAAGAATAGGGAAGCAGTTATCAGCATTGATTTGGACACTAGTCCAGTACACGATTGTTTGGATGAAGAAGCGCCCAAACCGGATCCAGCTGCGGATTCAGACAGCAGCGTGGAACTAATTGATAGTCCTGTTAAGCCCTCCCCCAACGTTGTTACGGAGGAGGCACATCCAGACGATGTCgacggagcagcagcagtgaaGTCTAAGCCAGTGCCCATGGCGGTTGCTGAGACCGAAATCAAGGAGGACGAGGTAGTGGAAGTGGACAGTAGCATCGAACTGATCAGCAGTCCCACTCCCCAAGCCTCGCCTACCAAAGAAGAAGGCGAGAGATCCAAAGAGCAGGAAGACCAGGAGCCTGAAACAGTTTCAGAGACCCGCAAAAATGAACCGGAAGAAGAGATCATGGATGTCGATCAGGAGGAGACTGCCAAACCTCCAGCAGACACGTCGGAGGATAAGAAAATGACCtcggaaaaggaaaaattgGAGCCATCTGCAGACAAAAGCGATTCTCCCATGGAAACTGAAGACGAACCAGCTATCGCCAATACAAACGACGTTGCCCTCGAAGTGCAGCTGGAAAAGGCAACAGAACCCAAGGCTCCTGATAACGATGACAACTTGCCTGCGGATGGAGACATCTTTTATGGCAAGGACTGCgtcaactgcaactgcaagaGGTTGCACAAACAGTATGTACTGGCCAACATGAGCCTCTTGAACTTCTACAACGTGATTCGAAAGGGCTACAAACAGCAGTTCGTTTGCATGGATTGCTACGACACGGCCATGGACTTGTACGAGGAATTTGCGGGTCAATTGGTTGCCAAGCAGCCACTGCTGCTAAAGGATTTCCGCCAGGATCATGCCGATTTCGTGGCCCTGGACAGCAGTGATgacgaagaggaggagaaACCGCCAGAAAAAACTGAATTTTCCAAAAACGACCTGAGTCTAATCGAAAATGAGCTGGAAGATGCTATCCAGACCGTGTTGAGTAGAGTCGAATTCCAGAATCAACTCACCTGGTCAAAGACCATACTAAAGGCCAAGTCGGAGCGTTTGGAGCGTCAGTTTGCGCTCGCAGATGCCGAACTCGAAAGAGTTCAGAGCACTGCGGACCAGATGCACACCGCTTTGTATAGCTCATGCGCGGTGGTGCATAAACATCTGCCGGCCCTGGATATCCAGCATAGCATGAGTGACTATGTGCAACATGTGCCGCCGGCGGGCGAGATCGTTCGCCGACCTATCGAATTAAACGAGACGTATTATGCTGTGAAGAACAAGGCTATTGCCAGTTGGGTCTCCATCAAGGTGATCGAATTCACCGAAAGCACTGCCATGAATGGCAACACCATGAAAAGCTACAAGATTAAGTATCTAAATACGCCCTATCAGATGATCAAGACCGTGACGGCCAAGCACATAGCCTACTTCGAGCCACCACCAGTGCGCCTGACAATTGGCACTCGAGTGATTGCATACTTTGACGGCACTACCTTGTCGCGGGGCAAGGAGAAGGGTACCGTGCAGAATGCTTTCTATCCGGGCATCATCGCTGAACCACTGAAGCAGGCCAATCGCTTCCGCTACCTGATCTTCTACGATGACGGTTACACTCAGTATGTGCCGCATCGCGATGTCCGGTTGGTTTGCCAGGCCTCGGAGAAAGTGTGGGAGGATGTGCACCCAGCGTCGCGTGACTTCATCCAGAAGTATGTGGAGAAGTACTCGGTGGACCGGCCCATGGTGCAGTGCACCCGGGGCCAGAGCATGAACACAGAGTCCAATGGTACCTGGCTATATGCCCGCGTCATCGACATCGACTGCAGCCTGGTCCTGATGCAGTTCGAGGGGGATAAGAATCACACCGAGTGGATCTATAGGGGATCCCTCCGATTGGGACCGGTGTTTAAGGAAACGCAGAATGCCATGAACAGTGCCAATGCACAGCAGATGCGTGTGCCCAGGcGAACGGAGCCCTTCATACGCTACACCAAGGAGATGGAGTCAAGCAGCCAGCAGGTTAATCAGCAGATGCGCGCCATTGCCAGAAAGAGTAGTGCCTCAATGCAAAATGTACCCCCGGCATCATCTTCGTCCTCGGCCCCGCCTCCTCATGTCATCACctcagccgccgctgccggagGACGCAGCAGCACTTCGGGAAGTGCCAATGCCGTCAAACACCTCAATAACTCCACCATTTATGTGGACGATGAGAACAGGCCCAAGGGTCATGTCGTCTACTTCACAGCCAAACGGAATCTGCCGCCTAAGATGTTCAAGCAGCACGACTGCAACCCCAACTGTCTGTTTAAAATTGTTCACCGTCTGGACAGCTATAGTCCGCTGGCAAAGCCACTCCTCTCCGGCTGGGAACGGTTAGTATTGCGGCAAAAAACCAAGAAGAACGTCGTCTACCGAGGACCCTGTGGCAAGAGCCTGCGAAACCTGGCCGAAGTGCACATCTATCTGCGGGCCACCGAGAATGTGCTGAATGTGGACAATTTTGACTTTACGCCTGACTTGCGCTGCCTGGCGGAGTATTCAATCGATCCGTCGATCGTCAAGGAGGCAGACATTTCCAAGGGGCAGGAAAAGATGGCCATTCCACTGGTTAACTACTATGACAACACCCTTCCACCGCCATGCACATATGCCAAGCAGCGGATACCAACCGAGGGCGTTCATTTAAATCTGGACGAAGAGTTCCTCGtgggctgcgactgcgacgacGATTGCTCGGACAAGTCAAAGTGCTCCTGCTGGCAGCTGACCGTGGCGGGCGTTAAGTACTGCAATCCGAAGAAACCCATTGAGGAGATCGGTTATCAGTACAAGCGACTGCACGAGCATGTACCCACCGGCATCTACGAGTGCAACTCGCGCTGCAAGTGTCGCAAGAACTGCCTTAATCGCGTCGTACAATTCTCGCTGGAGATGAAGCTGCAGGTGTTCAAGACATCCAATCGCGGATGGGGATTGCGCTGCGTGAACGACATTCCCAAGGGCGCCTTTATTTGCATCTATGCCGGCCACCTGCTCACTGAAACGATGGCTAACGAAGGCGGTCAGGATGCGGGCGATGAGTACTTCGCAGATCTTGACTACATCGAGGTGGCCGAGCAGCTCAAGGAGGGCTACGAGTCGGAGGTGGAACTACcgtcggagccggagccggaggacGAAACATACGGCCCAGATCCTGAGGATAATGACGATGACTTCCGACCCAATTACCATTATCAACGCAAAAACAAGCGAGTCTCCAGAAGCAACAACGAGTTGGACTCTCAGGAGCGGGCAGTAATCAACTTCAATCCGAACGCCGATCTGGACGAGACTGTGCGTGAGAATTCGGTGCGACGACTGTTCGGCAAGGACGAAGCACCCTATATCATGGATGCCAAGACCACAGGCAACCTAGGGCGTTACTTTAACCACTCGTGCAACCCGAATCTTTTCGTGCAGAACGTCTTTGTGGACACCCACGACCTACGGTTTCCCTGGGTGGCCTTCTTCTCGGCCTCGCACATCCGCTCCGGCACCGAGCTGACCTGGAACTACAACTACGAAGTGGGCGTAGTTCCCGGCAAGGTGCTATACTGCCAGTGCGGCGCCCCCAACTGTCGTATTCGTTTGCTCTAA
- Protein Sequence
- MDCAEGTESTAKEVPASSAAEEQEAGSTVVPAEKKIVESTVPAEREGADVEMEDLTLEDPSPSEKDVPSEEPKEVCEEAEAPKDKNREAVISIDLDTSPVHDCLDEEAPKPDPAADSDSSVELIDSPVKPSPNVVTEEAHPDDVDGAAAVKSKPVPMAVAETEIKEDEVVEVDSSIELISSPTPQASPTKEEGERSKEQEDQEPETVSETRKNEPEEEIMDVDQEETAKPPADTSEDKKMTSEKEKLEPSADKSDSPMETEDEPAIANTNDVALEVQLEKATEPKAPDNDDNLPADGDIFYGKDCVNCNCKRLHKQYVLANMSLLNFYNVIRKGYKQQFVCMDCYDTAMDLYEEFAGQLVAKQPLLLKDFRQDHADFVALDSSDDEEEEKPPEKTEFSKNDLSLIENELEDAIQTVLSRVEFQNQLTWSKTILKAKSERLERQFALADAELERVQSTADQMHTALYSSCAVVHKHLPALDIQHSMSDYVQHVPPAGEIVRRPIELNETYYAVKNKAIASWVSIKVIEFTESTAMNGNTMKSYKIKYLNTPYQMIKTVTAKHIAYFEPPPVRLTIGTRVIAYFDGTTLSRGKEKGTVQNAFYPGIIAEPLKQANRFRYLIFYDDGYTQYVPHRDVRLVCQASEKVWEDVHPASRDFIQKYVEKYSVDRPMVQCTRGQSMNTESNGTWLYARVIDIDCSLVLMQFEGDKNHTEWIYRGSLRLGPVFKETQNAMNSANAQQMRVPRRTEPFIRYTKEMESSSQQVNQQMRAIARKSSASMQNVPPASSSSSAPPPHVITSAAAAGGRSSTSGSANAVKHLNNSTIYVDDENRPKGHVVYFTAKRNLPPKMFKQHDCNPNCLFKIVHRLDSYSPLAKPLLSGWERLVLRQKTKKNVVYRGPCGKSLRNLAEVHIYLRATENVLNVDNFDFTPDLRCLAEYSIDPSIVKEADISKGQEKMAIPLVNYYDNTLPPPCTYAKQRIPTEGVHLNLDEEFLVGCDCDDDCSDKSKCSCWQLTVAGVKYCNPKKPIEEIGYQYKRLHEHVPTGIYECNSRCKCRKNCLNRVVQFSLEMKLQVFKTSNRGWGLRCVNDIPKGAFICIYAGHLLTETMANEGGQDAGDEYFADLDYIEVAEQLKEGYESEVELPSEPEPEDETYGPDPEDNDDDFRPNYHYQRKNKRVSRSNNELDSQERAVINFNPNADLDETVRENSVRRLFGKDEAPYIMDAKTTGNLGRYFNHSCNPNLFVQNVFVDTHDLRFPWVAFFSASHIRSGTELTWNYNYEVGVVPGKVLYCQCGAPNCRIRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00485130; iTF_00613502; iTF_00617643; iTF_00524408; iTF_00561752; iTF_00492226; iTF_00593829; iTF_00490076; iTF_00594545; iTF_00488659; iTF_00527301; iTF_00533095; iTF_00612808; iTF_00541069; iTF_00478013; iTF_00491507; iTF_00606304; iTF_00531649; iTF_00480161; iTF_00590230; iTF_00482975;
- 90% Identity
- -
- 80% Identity
- -