Dpec010847.1
Basic Information
- Insect
- Drosophila pectinifera
- Gene Symbol
- -
- Assembly
- GCA_008042775.1
- Location
- VNKC01001499.1:292751-298469[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.2e-10 8.3e-07 28.5 0.0 7 40 637 671 636 674 0.87 2 4 4.8e-14 9.5e-11 41.1 0.1 2 39 686 723 685 726 0.94 3 4 1.1e-17 2.2e-14 52.7 0.0 1 45 740 785 740 785 0.98 4 4 1.1e-19 2.3e-16 59.1 0.0 1 43 792 835 792 836 0.97
Sequence Information
- Coding Sequence
- ATGGTGCCGGACCTGGAGCTGAAGATGGCGATGTGGGTGGGCCTCTTGCGCACCGCCGAACAATTAAAGATCAAGGGCCTCTGCGAAACCGCCGAGAATGCGGATGACTTGAACGACGCGGCCACAGCAACGATCACAGTATCGGAGAACATCCAGCAGGCGGTTGTTGGTAACATTGTGAATGCCACCATAGTTCCTGGAGCTCCATCGCCATCCttggaacagcagcagcagcagcagcaacaccaccaaTCACAGGCGCAGGACCAGCAGGTGcatgcccagcagcagcaacagcagcagcagcagcaaatcaaCGCCGCTTTGCTGACGCAACACGGAGGAGTGCCCAGTGGCAGCAGTGGTGTTCCCCTATCCGGACAGTTGTTGAGCTCTGCAGCGAGCGGCAGTAGCGGTAGCTCCGGCGGACAGACCTCACTGACGCCACGCAAGTCCCGGTTAAAGCGATCCAAGTCACCGGATTTGCCGACAGGCTCTGGAAGCTCTGGTGGTTCGAGCAGCTCACagtcacagcagcagcagcagcagcaaccgcagcCAGCACACCACCATCCCCACCAGACCATTCTCATCCAGGGACAGAATCCCACCTCGATTGTTAGCCTGCAGCAGACGGCCGACGGCAACTATATACCGGTGGGCGCGGGAACTGGCGACGAGTCGGACACCGAGAACGATCACGATCACGAGCACGAACACGAGCATATCCACgggcacggacacggacacggacatcCACACGGACACggccacagtcacagtcacgaTCACGACCACGATCACGAGCTCGAGAATAAACCGAACAAGATCTGCAAGACCGAACAGTCGGTGGCATCGCCGGCGTCCAATTCATCGAGCGCCACCTCAAACAATGCAGCGGGCGTGAGCGGCGTGTCCACCACCGGCAACCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgactAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTTACACCCGAGCCACCAGCACCATCCGCCACCCCAGTCACCGTCACGGAGCACGTCGATCTGTCCTGCAACCCCAGCACGGACACGCGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAGTCCCCCATGCACTCGATATCCCATCACCATACCGGTGACGAGAGCAACTCCAATCTGGTGCAGCACATCAAGAGCGAGGTGATCGAGGCCAAGCacctggcagctgctgcccagCAGCATGCCCTCAaccaggcccagcagcagcaacatgccCATCACcaagcccagcagcagcaccagcagcagcagcaccagcagcagcaacaacagcaacagcaacagcagcagcaacagcagcatctcCATGCCCAGCAGTTGCAGGctcagttgcagcagcaacagcagcagcagcagcaacaacaccaccagcagcagcaacagcaggcggcagccgcggcggccgcagcagcagctgctggtgtGCATGGCCAGCATGGGGGACACGTGACGCACGCCGACATTGGCGGCGCCACAGTCATGGAGATCGATCCGAGCCAAATCAAACACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCTCAGGGCATATGGACATGTACAATTCGGACACGAGCGAGGACTCAATGATGATCGCCAACGGCTCGCCGCACGATCAGAAGGAGCCGCACTATACGAATTTGGACCAGCAGCACGGtctgggcggcggcagcgtTTGTGGCCCGGGGCcaggtggtgctggtggtggtgggggcATGAGTGGTGgggctggctctggctctggcgaGAAAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCTCTGCAGAATGCCTTGGAGGCGCTACGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCCTTTGGCATACCCTCGTCGACCCTCTACAAGATTGCCCGGCGGGAGGGCATCCGCCTTGCGGCACCGTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGATCTGGAGCGTGCCTTGGAGGCGATACGGGCGGGTAATACATCGGTGCAGAAAGCAAGCGCTGAGTTTGGCATACCAACAGgaacacTTTACGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCGACGCCTTGGTCCGAGGATGCCATGAACGAGGCCCTCAACTCTGTgcgTGTCGGCCAAATGTCCATCAACCAGGCGGCCATTCACTATAACCTGCCCTACAGCTCGCTCTATGGCCGCTTCAAACGTGGCAAATACGATGTCGTGGCCAATACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAATACCACCGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAACTCGTTGCACATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCTCATCCCCCAACGCCGCAGCACCACAGCACGCCGCAACACCATAGCTCGGCGCAGGGGCCGCCCACGCCGCAGCacatgcaacagcaacagcacgtGGTGCATATGCAACAGCAGTCGCCCCATCCGGGTCACCATCCGCAGCACATGCAGCAGGATGTGGTTACGTCGAGCAGCCAGGTGGTGCacagccaacagcagcagcagcagcaacagcagcagcttcagcagaTCTATCAGCACCACGGGACGCCGGAGCGTAGTTGA
- Protein Sequence
- MVPDLELKMAMWVGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAPSPSLEQQQQQQQHHQSQAQDQQVHAQQQQQQQQQQINAALLTQHGGVPSGSSGVPLSGQLLSSAASGSSGSSGGQTSLTPRKSRLKRSKSPDLPTGSGSSGGSSSSQSQQQQQQQPQPAHHHPHQTILIQGQNPTSIVSLQQTADGNYIPVGAGTGDESDTENDHDHEHEHEHIHGHGHGHGHPHGHGHSHSHDHDHDHELENKPNKICKTEQSVASPASNSSSATSNNAAGVSGVSTTGNQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIEAKHLAAAAQQHALNQAQQQQHAHHQAQQQHQQQQHQQQQQQQQQQQQQQQHLHAQQLQAQLQQQQQQQQQQHHQQQQQQAAAAAAAAAAAGVHGQHGGHVTHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGGSVCGPGPGGAGGGGGMSGGAGSGSGEKALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSAQGPPTPQHMQQQQHVVHMQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00619072;
- 90% Identity
- iTF_00594628;
- 80% Identity
- -