Dpau008770.1
Basic Information
- Insect
- Drosophila paulistorum
- Gene Symbol
- -
- Assembly
- GCA_018152135.1
- Location
- JAECXG010000822.1:46176167-46179314[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.99 76 4.1 7.4 2 23 216 238 215 239 0.92 2 15 0.025 1.9 9.2 2.8 2 23 280 301 280 301 0.96 3 15 0.21 16 6.3 2.4 1 19 369 387 369 391 0.84 4 15 0.0016 0.12 12.9 1.7 1 23 399 422 399 422 0.98 5 15 0.00018 0.014 15.9 0.2 2 23 427 448 426 448 0.97 6 15 0.0096 0.74 10.5 1.7 1 22 496 517 496 520 0.90 7 15 5 3.9e+02 1.9 0.7 3 21 527 545 527 546 0.85 8 15 0.0088 0.68 10.6 3.6 1 23 565 590 565 590 0.97 9 15 0.029 2.2 9.0 3.6 2 23 621 643 620 643 0.94 10 15 0.0085 0.66 10.6 0.3 3 23 650 671 648 671 0.92 11 15 0.02 1.6 9.5 0.3 2 23 675 697 674 697 0.94 12 15 6.1e-06 0.00047 20.5 2.3 1 23 703 725 703 725 0.98 13 15 0.026 2 9.1 1.7 1 23 729 752 729 752 0.94 14 15 0.003 0.24 12.0 0.4 1 23 758 781 758 781 0.97 15 15 0.083 6.5 7.5 0.4 5 23 794 813 785 813 0.84
Sequence Information
- Coding Sequence
- ATGGACAAAAAGTTACAAAAATGTCTGCATTGTACAGTGGTCAATCCAAAATTAAAATACCATGAAATATTTAAAGGACTTGGCGCAGAAATTGGATTGCAACAGTTATTGTCAAATCATTTCCAATTTGAGGTCACCGAAGACTCGAAAAAGTCGCAGCTACTTTGCGAAGAGTGTGTGAATAGTTTAATTCGATTTTTTGACATCGATGAATTGAAACGGGAGCAAAATGCAACCAGGTCAAAAACTCAGCCCACAGAAGCAGCTAACGAAGTGGATGTGGAAAAATCAATGATTGATGAGTCCTGCATTTATGATCTTATTTTTAAATCGGATGATGTTGCGCCGGCGGAGGAGGAGGTGGAGGAGGATAACGATGTTCCCAGCAATTCAGAGGAGGTGAGAATTGAAGATGTTATTGTAGAGGATCGTGTAACTGTAATCCGATTGCCAAATAACGAGGAAGCAGAGGAAGTGGATTTAGAAACTGAACAAGAAGACGAACATGATCTTAAAGAAGACAGCAATGTGGTAATCATAAATTTCGTGGAAATTAAAGAGAAGGATGACATTGTTGATTTATATGGTTACTTGGCCACTGCGGTGAAAACGAACTTTGAAACCTTATCCTTTGACTGGAGCACCAGCTGCAAACACTGCTCTTTGTCTTGTACAAATTATCAGCAGCTACTTAACCATGTGACCCAAAAGCACCATGGTCATTCCTTTGATTGTCCCATTGAGGGTTGCTTGACGAAAGGACTACAGGACAAACAATATCTAGCTATGCACTTGGTTACCCATCATGGTCCAATCGCTGACATACCCATCTATGGCAGTTGTCCGGAGTGCAAATTAACTTTCTCAAATATTCTGCAATATAATAAACATTCCTGTTCCCATGTGATTAAGAAGAAAAGAGGGATACAGCTGTATTGCGACATGTGCTCTATTGAGTTTCCCTCTTGGAAACGTTTCAATTTCCATAACCAATTCCATTTGGAGCGTCATCGACCACGAGCGTGTTTTGTTTGCAACTATGCAGACAACAATATCGGCGAACTCTTTCAGCATTTGCAATATGCCCATGAACCAGAGAATACATTCTTTTGTAATCTGTGCGATCGCACTTTTCGCGATGAAGCTGTCTATTTGGAGCACAGCAAGTGTCATTCGAATGCCAATAGTAATACATACACTTGTGGTGAATGTTTCAACACTTTTGACACACGAAGTCGTTTCAATGGACACATGCGCTCGATGCATGGCACCTTTATCAGTTGCGAGATTTGTTCCCGTGAATTTGCCAGCGAAGCCACCTACAATGTCCATATGAAGAAGCATTTGATAATTGAACGAGATGTTCATATATGCAGAAATTGTGGTCAATTGAGTGAATATGAGGCTCGTATGCTTCAGCATATAGAAAATGAATCAACAAATTGTCACAATGCTGAAATCTACACTGAACTCTTACGAGATGCTTATATATGCGAAATGTGTTCATCTTATTTTCGTGAAAAATCTGATTTACATAAGCATCGTCAATCGGGTGTCCATAATAATGGTATATATTGGTGTCAGCCATGTGACAAAGAGTTCACCGATATGAAAATCTATCGTCATCATTTAAGAAATTTTCAACAATTGAAAACGGATACAGAACACAGGAAATTGGAAATTTGCTTATACTATATGTGTGATCAGATGGATTGCTTTCAATCATATACGCATTGGAATTCCTTGTATACCCATAAGAGACGGACTCACAAAAACAATATGAAGCCAGCTAAATTGAAAGAAGAGCAACTATCACCATCCACATCGAAATCAATTGGCAGTGAAAAGAAAACGAAATGGCAATGTCAGTTTTGTGACAAGGAATGTTGTTCCAAAATGTCACTGTCCGTTCATGTGGCACGCAGTCATAATAATGATAATGTGATTTGTTCTTTATGCAATGCTTCGTATAAGAATCAGGAGGCTTTGGATAAACATCATGCCTATTGGCATGAACCTATCGAGTGCCCCAAATGCTTTAAGATTGTAAAGAATCGCCGCAATTATGATACCCATGAGAATGTTGTTCATTCCAATAACAAACGTTATACCTGTGAGATTTGTAACAAGGGTTTCTATCACAACAGCGAAATGAAAGCACATCAGAAGCTTCATACTGAGCTGTTTAGTTGTAAGAACTGTAGCTTTACCACACGAAAGAAAACTTCTTTATCCGTTCATGTTATGGGTCAGCATTTGAAGCGTTTCGCCTTTGAGTGCAAATTGTGCATGAAACGGTTTGGTCGTCGTCAGGGATTAGGCGCGCACATGCAACGTGTGCATAGCACTAAACATATTTGTCAGGAATATATTACTGATGGCTGCAATCGTAGTTTTCCCTCAACATTGGCATTGAGTCAACATGTGAAGAAAGTTCACAAGGATACTGTATTTCTGCACGATGAAGACGATGAGGAGGAGCAATTGGAGCTAGAGCTGGAGGACGAGGTTGGTCCATCATCATCTAAGAAACGTTGTTTTCAAATAAATGATACCGAAATTGAGTTTATCGACGAAAGTGCATATGATAGTCAGGAATTTATAGATACAGAGGAAATGCACGATGTCAAGTAG
- Protein Sequence
- MDKKLQKCLHCTVVNPKLKYHEIFKGLGAEIGLQQLLSNHFQFEVTEDSKKSQLLCEECVNSLIRFFDIDELKREQNATRSKTQPTEAANEVDVEKSMIDESCIYDLIFKSDDVAPAEEEVEEDNDVPSNSEEVRIEDVIVEDRVTVIRLPNNEEAEEVDLETEQEDEHDLKEDSNVVIINFVEIKEKDDIVDLYGYLATAVKTNFETLSFDWSTSCKHCSLSCTNYQQLLNHVTQKHHGHSFDCPIEGCLTKGLQDKQYLAMHLVTHHGPIADIPIYGSCPECKLTFSNILQYNKHSCSHVIKKKRGIQLYCDMCSIEFPSWKRFNFHNQFHLERHRPRACFVCNYADNNIGELFQHLQYAHEPENTFFCNLCDRTFRDEAVYLEHSKCHSNANSNTYTCGECFNTFDTRSRFNGHMRSMHGTFISCEICSREFASEATYNVHMKKHLIIERDVHICRNCGQLSEYEARMLQHIENESTNCHNAEIYTELLRDAYICEMCSSYFREKSDLHKHRQSGVHNNGIYWCQPCDKEFTDMKIYRHHLRNFQQLKTDTEHRKLEICLYYMCDQMDCFQSYTHWNSLYTHKRRTHKNNMKPAKLKEEQLSPSTSKSIGSEKKTKWQCQFCDKECCSKMSLSVHVARSHNNDNVICSLCNASYKNQEALDKHHAYWHEPIECPKCFKIVKNRRNYDTHENVVHSNNKRYTCEICNKGFYHNSEMKAHQKLHTELFSCKNCSFTTRKKTSLSVHVMGQHLKRFAFECKLCMKRFGRRQGLGAHMQRVHSTKHICQEYITDGCNRSFPSTLALSQHVKKVHKDTVFLHDEDDEEEQLELELEDEVGPSSSKKRCFQINDTEIEFIDESAYDSQEFIDTEEMHDVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00503490;
- 90% Identity
- iTF_00503490;
- 80% Identity
- -